View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_89 (Length: 208)
Name: NF18054_high_89
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_89 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 39882519 - 39882693
Alignment:
| Q |
21 |
attaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattcttgtgcaagttctaaggtactctaatgtctcgttctt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
39882519 |
attaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatttccttgtgcaagttctaaggtactctaatgtctcgttctt |
39882618 |
T |
|
| Q |
121 |
ttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39882619 |
ttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttg |
39882693 |
T |
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Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 11037069 - 11036894
Alignment:
| Q |
21 |
attaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattctt-gtgcaagttctaaggtactctaatgtctcgttct |
119 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||| | |||| | |||| |
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| T |
11037069 |
attaaaagagaatgaaaatgagttgccacacccacaccacacgtcatgatcatcaccctttcctttgtgcaagttctaaggtactccattgtcccattct |
11036970 |
T |
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| Q |
120 |
tttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttg |
195 |
Q |
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| T |
11036969 |
tttgcttaattgttttcatattccaatttctaattctagcattattttctttgaagcttgtgctcctcttcctttg |
11036894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 13164091 - 13163916
Alignment:
| Q |
21 |
attaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattctt-gtgcaagttctaaggtactctaatgtctcgttct |
119 |
Q |
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||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||| | | ||| |||||||||||||||||||| | |||| | |||| |
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| T |
13164091 |
attaaaagataatgaaaatgagttgccacacccacaccagacgtcatgatcatcaccctttcctttgtgcaagttctaaggtactccattgtcccattct |
13163992 |
T |
|
| Q |
120 |
tttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttg |
195 |
Q |
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||||||||||| | | |||| |||||||||| ||||||| ||||||||||||| |||||||| |||| |||||||| |
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| T |
13163991 |
tttgcttaattgttttcatattccaatttctaagtctagcattattttctttgaagcttgtgctcctcttcctttg |
13163916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 547783 - 547676
Alignment:
| Q |
87 |
tgcaagttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttcct |
186 |
Q |
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|||||||||| |||||| |||| || || ||||||||||||||||| | ||||||||||| | | ||| ||||||||||||||||||||||||||||||| |
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| T |
547783 |
tgcaagttctgaggtac-ctaaggtgtcattcttttgcttaattattttcatactccaatctttaagtttaggattattttctttgtagcttgtgttcct |
547685 |
T |
|
| Q |
187 |
tttcctttg |
195 |
Q |
| |
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||||||||| |
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| T |
547684 |
tttcctttg |
547676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 28201092 - 28201193
Alignment:
| Q |
94 |
tctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctt |
193 |
Q |
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|||||| ||||| ||||||| ||||||||||||||||| | || |||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||| |
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| T |
28201092 |
tctaagatactccgatgtctcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagcttgtgttcctttttctt |
28201191 |
T |
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| Q |
194 |
tg |
195 |
Q |
| |
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|| |
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|
| T |
28201192 |
tg |
28201193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 2270005 - 2269898
Alignment:
| Q |
84 |
ttgtgcaagttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtcta-ggattattttctttgtagcttgtgt |
182 |
Q |
| |
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|||| ||||||||||||||| ||||||||| ||||||| ||||||||| | ||||||||||||||| |||||| ||||||||||||||| ||||||| |
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| T |
2270005 |
ttgtacaagttctaaggtaccctaatgtct--ttctttt-cttaattattttcatactccaatttctaagtctatggattattttctttgaagcttgtcc |
2269909 |
T |
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| Q |
183 |
tccttttcctt |
193 |
Q |
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||||||||||| |
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| T |
2269908 |
tccttttcctt |
2269898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 40729890 - 40729801
Alignment:
| Q |
91 |
agttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtg |
181 |
Q |
| |
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|||||||| ||||||||||||||| ||| ||| ||||||||| | ||||| ||||||||| ||||||| ||||||||||||| |||||||| |
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| T |
40729890 |
agttctaaagtactctaatgtctcattcattt-cttaattattttcataccccaatttctaagtctagcattattttctttgaagcttgtg |
40729801 |
T |
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