View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_high_9 (Length: 619)
Name: NF18054_high_9
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 204 - 603
Target Start/End: Original strand, 27882936 - 27883329
Alignment:
| Q |
204 |
ctaaagatattttgtagtctagtagtattactccgcgtggcaattcaatgaggcaccattcacacgtgacgtgtggcatcgatcaaaacaacatgatcga |
303 |
Q |
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| T |
27882936 |
ctaaagatattttgtagtctagtagtattactccgcgtggcaattcaatgaggcaccattcacacgtgacgtgtggcatcgatcaaaacaacatgatcga |
27883035 |
T |
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| Q |
304 |
agtcgaacctcatgtcttgtcctcctctacaacggttctatttgagtaacgacaatggggctccgaaccacatgtttaccatccgtccacgtaagcgacc |
403 |
Q |
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| T |
27883036 |
------acctcatgtcttgtcctcctctacaacggttctatttgagtaacgacaatggggctccgaaccacatgtttaccatccgtccacgtaagcgacc |
27883129 |
T |
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| Q |
404 |
cgaaaaccgctccagaaggatccatcttcatgtttcgggtatccgccgttaacgtcacaacataactcctcttcttcactccctccgtgaaaacaagctt |
503 |
Q |
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| T |
27883130 |
cgaaaaccgctccagaaggatccatcttcatgtttcgggtatccgccgttaccgtcacaacataactcctcttcttcactccctccgtgaaaacaagctt |
27883229 |
T |
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| Q |
504 |
tgacggcctcaccgtcactgttacccccttaatctgcgactctacattcacacgataaaccgaattcaccggtcccacattagtcacagtccttataaac |
603 |
Q |
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| T |
27883230 |
tgacggcctcaccgtcactgttacccccttaatctgcgactctacattcacacgataaaccgaattcaccggtcccacattagtcacagtccttataaac |
27883329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 27882733 - 27882845
Alignment:
| Q |
1 |
aaagttaaagaacagtgtaaaatggaaatcacaaatcataacttatcctataaatttctttatgatctatataactagacatctaaaagtctagaaatag |
100 |
Q |
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| T |
27882733 |
aaagttaaagaacggtgtaaaatggaaatcacaaatcataacttatcctataaatttctttatgatctatataactagacatctaaaagtctagaaatag |
27882832 |
T |
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| Q |
101 |
tacaagctgaagt |
113 |
Q |
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| T |
27882833 |
tacaagctgaagt |
27882845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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