View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_low_11 (Length: 617)
Name: NF18054_low_11
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 82 - 605
Target Start/End: Complemental strand, 42450157 - 42449642
Alignment:
| Q |
82 |
caattcatacagagtgttatgaagttcgaacatatatatacaagttaaaatcctaatattgaatcacatacctcgagcgaaaacaattaattatttattc |
181 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | |
|
|
| T |
42450157 |
caattcatacagagtgtaatgaagttcgaacatatatatacaagttaaaatcctaatatcgaatcacatacctcgagcgaaaacaattcat--------c |
42450066 |
T |
|
| Q |
182 |
ctttgatcggaagaaagcttttcttgtactttcctatgtgacaatcaaatttgtctcctttaacaccaagcttctcaatcatttgagtccttaaatcaac |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42450065 |
ctttgatcggaagaaagcttttcttgtactttcctatgtgacaatcaaatttgtctcctttaacaccaagcttctcaatcatttgagtccttaaatcaac |
42449966 |
T |
|
| Q |
282 |
ccagactagttctttatcacctttgctgaagaagactatattgttcttattcccaactccaatggggaagttaacaaaaggtaagggtccaacaataaag |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42449965 |
ccagactagttctttatcacctttgctgaagaagactatattgttcttattcccaactccaatggggaagttaacaaaaggtaagggtccaacaataaag |
42449866 |
T |
|
| Q |
382 |
agattgatccaagattctctcgcaccaagtttacccaaaattgatatgcgaaaagtactcatattctttaaataagttgagatcaaagtaatagattcat |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42449865 |
agattgatccaagattctctcgcaccaagtttacccaaaattgatatgcgaaaagtactcatattctttaaataagttgagatcaaagtaatagattcat |
42449766 |
T |
|
| Q |
482 |
ttaacagagttaggtgcctcaccacgaatcgagagtcaaaactaccatccatgtttgagggcttgggtgttgtaagcaacacctcgttgctaaagtcaaa |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42449765 |
ttaacagagttaggtgcctcaccacgaatcgagagtcaaaactaccatccatgtttgagggcttgggtgttgtaagcaacacctcgttgctaaagtcaaa |
42449666 |
T |
|
| Q |
582 |
tgaaagcaaacattcttcaatatt |
605 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42449665 |
tgaaagcaaacattcttcaatatt |
42449642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 160 - 347
Target Start/End: Complemental strand, 42262669 - 42262482
Alignment:
| Q |
160 |
gaaaacaattaattatttattcctttgatcggaagaaagcttttcttgtactttcctatgtgacaatcaaatttgtctcctttaacaccaagcttctcaa |
259 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
42262669 |
gaaaacaactacgtatttattccttcaatcggaagaaagcttttcttgtactttcctatatgacaacgaaatttgtctccttcaacaccaagctcttcaa |
42262570 |
T |
|
| Q |
260 |
tcatttgagtccttaaatcaacccagactagttctttatcacctttgctgaagaagactatattgttcttattcccaactccaatggg |
347 |
Q |
| |
|
|||| ||||| | ||||||||||| |||| || ||||| | |||| | |||||||||||||| ||||| || |||| ||| ||||| |
|
|
| T |
42262569 |
tcatctgagttttcaaatcaacccaaactattttattatctcttttgtttaagaagactatattattcttcttaccaagtcctatggg |
42262482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 373 - 605
Target Start/End: Complemental strand, 42262432 - 42262203
Alignment:
| Q |
373 |
acaataaagagattgatccaagattctctcgcaccaagtttacccaaaattgatatgcgaaaagtactcatattctttaaataagttgagatcaaagtaa |
472 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||||| | | || | |||| |||| |||||||||| |
|
|
| T |
42262432 |
acaataaagagatttatccatgattctctcacaccaagtttacccaaaattgataagcgaaaagtagcc---tcctctcgataacttgatatcaaagtaa |
42262336 |
T |
|
| Q |
473 |
tagattcatttaacagagttaggtgcctcaccacgaatcgagagtcaaaactaccatccatgtttgagggcttgggtgttgtaagcaacacctcgttgct |
572 |
Q |
| |
|
| | |||||||||| | | ||| ||| |||||||| | | ||| ||||||||||||||||||| |||| ||| ||| |||| |||| ||||| |
|
|
| T |
42262335 |
tggtgccatttaacagcgccaagtgtctctccacgaattcaacattgaaattaccatccatgtttgagggtatgggggttttaaacaactcctcattgct |
42262236 |
T |
|
| Q |
573 |
aaagtcaaatgaaagcaaacattcttcaatatt |
605 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||| |
|
|
| T |
42262235 |
aaagtcaaatgacaacaaacactcttcaatatt |
42262203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 522 - 601
Target Start/End: Original strand, 39721159 - 39721238
Alignment:
| Q |
522 |
actaccatccatgtttgagggcttgggtgttgtaagcaacacctcgttgctaaagtcaaatgaaagcaaacattcttcaa |
601 |
Q |
| |
|
|||| |||||| || |||||| |||||||||||| ||||||||| || |||||||||||||| | |||||||||||||| |
|
|
| T |
39721159 |
actaacatccaagtatgagggtgtgggtgttgtaatcaacacctcattactaaagtcaaatgataccaaacattcttcaa |
39721238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 39720788 - 39720845
Alignment:
| Q |
161 |
aaaacaattaattatttattcctttgatcggaagaaagcttttcttgtactttcctat |
218 |
Q |
| |
|
|||| ||||||||||| |||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
39720788 |
aaaaaaattaattattcattcctcctattggaagaaagctttttttgtactttcctat |
39720845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 438
Target Start/End: Complemental strand, 368886 - 368803
Alignment:
| Q |
355 |
acaaaaggtaagggtccaacaataaagagattgatccaagattctctcgcaccaagtttacccaaaattgatatgcgaaaagta |
438 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| ||||| || |||||| || ||| | |||||||||| |||||||| |
|
|
| T |
368886 |
acaaaaggtaatggtccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagta |
368803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 314
Target Start/End: Complemental strand, 16921189 - 16921107
Alignment:
| Q |
232 |
ttgtctcctttaacaccaagcttctcaatcatttgagtccttaaatcaacccagactagttctttatcacctttgctgaagaa |
314 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| || | ||||||| |||||||| ||| |||||| |||| |||||||| |
|
|
| T |
16921189 |
ttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaa |
16921107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 435
Target Start/End: Original strand, 44918483 - 44918551
Alignment:
| Q |
367 |
ggtccaacaataaagagattgatccaagattctctcgcaccaagtttacccaaaattgatatgcgaaaa |
435 |
Q |
| |
|
|||||||||| |||||| || |||| |||||| || ||||||||| ||| |||||||||||| ||||| |
|
|
| T |
44918483 |
ggtccaacaacaaagagtttagtccacgattctttcccaccaagttcacctaaaattgatatgtgaaaa |
44918551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 440
Target Start/End: Complemental strand, 34281997 - 34281924
Alignment:
| Q |
367 |
ggtccaacaataaagagattgatccaagattctctcgcaccaagtttacccaaaattgatatgcgaaaagtact |
440 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||| | ||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
34281997 |
ggtccaaccataaagagtttgatccacgattctttgaaaccgagttgacccaaaattgatacacgaaaagtact |
34281924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 29124352 - 29124292
Alignment:
| Q |
239 |
ctttaacaccaagcttctcaatcatttgagtccttaaatcaacccagactagttctttatc |
299 |
Q |
| |
|
|||||| |||||||| |||||||||||| || || ||||||| ||| ||||||||||||| |
|
|
| T |
29124352 |
ctttaaaaccaagctcctcaatcatttgggtactcaaatcaaaccaagctagttctttatc |
29124292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 29137486 - 29137426
Alignment:
| Q |
239 |
ctttaacaccaagcttctcaatcatttgagtccttaaatcaacccagactagttctttatc |
299 |
Q |
| |
|
|||||| |||||||| ||| |||||||| || |||||||||| ||| ||||||||||||| |
|
|
| T |
29137486 |
ctttaaaaccaagctcctcgatcatttgggtacttaaatcaaaccaagctagttctttatc |
29137426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University