View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_low_15 (Length: 541)
Name: NF18054_low_15
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 3 - 522
Target Start/End: Complemental strand, 13706669 - 13706153
Alignment:
| Q |
3 |
taaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatatcttctccatgaggtc |
102 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13706669 |
taaccacttccaaaaaccaaacaaaatatccatggcaactttattagtaataaacaaagacaacaccttaagggttactatatatcttctccattaggtc |
13706570 |
T |
|
| Q |
103 |
aatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattgaacatcaatggcaca |
202 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||| ||||||| |
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| T |
13706569 |
aatttcctgctttataggaatttcaggaaaaaactccattccatttgatctaaacccacttgccattc---catcatcatcattgaacatcattggcaca |
13706473 |
T |
|
| Q |
203 |
tagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccgatattcatcatgctca |
302 |
Q |
| |
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|||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13706472 |
tagccaccaattccatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccgatattcatcatgctcg |
13706373 |
T |
|
| Q |
303 |
gagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttgaactgttacctcgattctt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
13706372 |
gagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagcagtgttccctttgaactgttacctcgattctt |
13706273 |
T |
|
| Q |
403 |
tttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatttccacccacttgtta |
502 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
13706272 |
tttcttggctttctggcgtcgcttagtggtgttccagtggtttttgacggagttctcggtgcgccccggcaatctccttgcaatttccgcccacttgtta |
13706173 |
T |
|
| Q |
503 |
ccaactatcttgtgagcttc |
522 |
Q |
| |
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|||||||||||||||||||| |
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| T |
13706172 |
ccaactatcttgtgagcttc |
13706153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 3 - 523
Target Start/End: Complemental strand, 13644220 - 13643703
Alignment:
| Q |
3 |
taaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatatcttctccatgaggtc |
102 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13644220 |
taaccactttcaaacaccaaacaaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggtttctatatatcttctccatgaggtc |
13644121 |
T |
|
| Q |
103 |
aatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattgaacatcaatggcaca |
202 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||| |
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| T |
13644120 |
aatttcctgctttttaggaatttcaggaaaaaactccattccatttgatccaaacccacttgccattc---catcatcatcattgaacatcattggcaca |
13644024 |
T |
|
| Q |
203 |
tagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccgatattcatcatgctca |
302 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13644023 |
tagccaccaatttcatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccgatattcatcatgctca |
13643924 |
T |
|
| Q |
303 |
gagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttgaactgttacctcgattctt |
402 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
13643923 |
gagaattagtcatcatctccttttcaactttcttggcacaagtgacttccattatgtatttcaaaagcagtgttccctttgaactgttacctcgattctt |
13643824 |
T |
|
| Q |
403 |
tttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatttccacccacttgtta |
502 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||| ||||||| ||||||||||| |
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| T |
13643823 |
tttcttggctttcaggcagcgcttagtggcgttccaatggtttttgacggagttctcggtgcgccccgacaatcttcttgaaatttccgcccacttgtta |
13643724 |
T |
|
| Q |
503 |
ccaactatcttgtgagcttcg |
523 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
13643723 |
ccaactatcttgtgagcttcg |
13643703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 174 - 523
Target Start/End: Original strand, 17173704 - 17174053
Alignment:
| Q |
174 |
catcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatt |
273 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||| ||||| | | |||||||| ||||||||||| ||||||||||| || |||||| |||| |
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| T |
17173704 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctttgagctttcaaaatt |
17173803 |
T |
|
| Q |
274 |
tggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagt |
373 |
Q |
| |
|
| ||||| |||| |||||||||| ||||| ||||| |||||||||||||| ||| ||| || ||||||||||||||||||| ||| ||| |
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| T |
17173804 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
17173903 |
T |
|
| Q |
374 |
gttgcctttgaactgttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggca |
473 |
Q |
| |
|
|| |||||||||| |||||||| ||||| |||||| || ||||| ||||||||||| ||||||||||| |||| ||||||||| |||||||| |||| |
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| T |
17173904 |
attccctttgaactcttacctcggttcttcctcttgggattttggcgacgcttagtggcattccagtggttcttgatggagttctcagtgcgccctggca |
17174003 |
T |
|
| Q |
474 |
ttctccttgcaatttccacccacttgttaccaactatcttgtgagcttcg |
523 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||| |||||||||||| |
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| T |
17174004 |
atctccttgaaatttcagtccacttgtttccaactattttgtgagcttcg |
17174053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 523
Target Start/End: Original strand, 13467837 - 13467938
Alignment:
| Q |
422 |
cgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatttccacccacttgttaccaactatcttgtgagctt |
521 |
Q |
| |
|
|||||||||| ||||||| |||| |||| ||||||||| ||||| || |||| ||| ||||||||||| |||||||||| |||||| |||||| |||| |
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|
| T |
13467837 |
cgcttagtggagttccagcggttcttgatggagttctcagtgcgtccaggcagtctacttgcaatttcagcccacttgtttccaactgccttgtgtgctt |
13467936 |
T |
|
| Q |
522 |
cg |
523 |
Q |
| |
|
|| |
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|
| T |
13467937 |
cg |
13467938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 13425399 - 13425467
Alignment:
| Q |
173 |
tcatcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttca |
241 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||| ||||||| |||||||| | ||||| |||||||||| |
|
|
| T |
13425399 |
tcataatcatcattgaacgtcattggcacatatccaccaagttcatcttctaaagtagtcaaaccttca |
13425467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 17173578 - 17173666
Alignment:
| Q |
69 |
cttaagggttactatatatcttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaac |
157 |
Q |
| |
|
|||||||||| ||| ||| |||||||||| |||||||| || || | ||||| | |||||||||||| ||||||| |||||||||| |
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|
| T |
17173578 |
cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaggaaaaaactcaattccatatgatccaaac |
17173666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 174 - 523
Target Start/End: Original strand, 34653473 - 34653822
Alignment:
| Q |
174 |
catcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatt |
273 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| ||| ||||||| || |||||| || ||||||||||||| |||||||||||| || |||||| | || |
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|
| T |
34653473 |
catcatcaccattgaacatcattggagcatacccatcaatttcctcatttggattaaccaaaccttcagagctaaaatcactctccgagctttcaaagtt |
34653572 |
T |
|
| Q |
274 |
tggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagt |
373 |
Q |
| |
|
||| |||||||| | ||||||| |||| |||||| |||||| |||||||||| ||| ||| ||| | | |||||||||||||||||||| |||||| |
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|
| T |
34653573 |
tgggtgattcccaaatttcatcacgctcgtagaattcgtcatcagctccttttcagcttccttagcatcattgacttccattatgtatttcaagagtagt |
34653672 |
T |
|
| Q |
374 |
gttgcctttgaactgttacctcgattctttttcttggctttctggcggcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggca |
473 |
Q |
| |
|
|| |||||||||| |||| ||||||||| |||| | || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||| |
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|
| T |
34653673 |
tttccctttgaactattactccgattctttctcttagtattatggcggcgcttggtggcgttccagtggttcttgattgagttctcggtgcgcccttgca |
34653772 |
T |
|
| Q |
474 |
ttctccttgcaatttccacccacttgttaccaactatcttgtgagcttcg |
523 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
34653773 |
ttctctttgcaatttcagcccacttgttcccaactatcttatgagcttcg |
34653822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 523
Target Start/End: Complemental strand, 25522755 - 25522653
Alignment:
| Q |
421 |
gcgcttagtggcgttccagtggtttttgacggagttctcggtgcgccccggcattctccttgcaatttccacccacttgttaccaactatcttgtgagct |
520 |
Q |
| |
|
|||||||| || |||||| |||| |||| |||||||||||| || || || | |||| |||||||||| | ||||||| |||||||||||||||||| |
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| T |
25522755 |
gcgcttagcggagttccaacggttcttgatggagttctcggtacgtccaggaagtctctttgcaatttcagcaaacttgttcccaactatcttgtgagct |
25522656 |
T |
|
| Q |
521 |
tcg |
523 |
Q |
| |
|
||| |
|
|
| T |
25522655 |
tcg |
25522653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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