View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_16 (Length: 525)
Name: NF18054_low_16
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 424 - 522
Target Start/End: Original strand, 36085951 - 36086048
Alignment:
| Q |
424 |
cataagaatctaaaacctaaaactcataaattagaaaaaactca-caattaggatcatgaaactcacaaatcagaaattcatcatcaaattcagttgaat |
522 |
Q |
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| T |
36085951 |
cataagaatctaaaacctaaaactcataaactagattaaactcataaattaggatcgtgaaact--caaatcagaaactcatcatcaaattcagttgaat |
36086048 |
T |
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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 24414328 - 24414383
Alignment:
| Q |
128 |
tcaaaccgatacaattaatagatggaaggaagaaatcttcaattcttcactaacaa |
183 |
Q |
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| T |
24414328 |
tcaaaccgatacaattaatagatggaaggaagaaatcttcaattctgcactaacaa |
24414383 |
T |
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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 1759141 - 1759099
Alignment:
| Q |
179 |
aacaaacacactaacatttcaattctaaaacctaacattacaa |
221 |
Q |
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| T |
1759141 |
aacaaatacactaacatttcaatcctaaaacctaacattacaa |
1759099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 31039014 - 31038975
Alignment:
| Q |
201 |
ttctaaaacctaacattacaagtattcaattaaaaattca |
240 |
Q |
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| T |
31039014 |
ttctaaaacctaacattacaagtattcaattttaaattca |
31038975 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 439887 - 439948
Alignment:
| Q |
101 |
tcacactgctttctctcttttagcttctcaaaccgatacaattaatagatggaaggaagaaa |
162 |
Q |
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| T |
439887 |
tcacactaatttctctcttttagcttctcaaaccaattcaattaacagatggaaggaagaaa |
439948 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 459
Target Start/End: Original strand, 1335061 - 1335093
Alignment:
| Q |
427 |
aagaatctaaaacctaaaactcataaattagaa |
459 |
Q |
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| T |
1335061 |
aagaatctaaaacctaaaactcataaattagaa |
1335093 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 31184299 - 31184231
Alignment:
| Q |
171 |
tcttcactaacaaacacactaacatttcaattctaaaacctaacattacaagtattcaattaaaaattcag |
241 |
Q |
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| T |
31184299 |
tcttcattaacaaacaaacaaacatttcaattctaaaaccta--ataacaagtattgaattaaaaattcag |
31184231 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 14983485 - 14983522
Alignment:
| Q |
178 |
taacaaacacactaacatttcaattctaaaacctaaca |
215 |
Q |
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| T |
14983485 |
taacaaacacactaacatttcaattttaaaacctaaca |
14983522 |
T |
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