View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_low_17 (Length: 505)

Name: NF18054_low_17
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_low_17
NF18054_low_17
[»] chr5 (2 HSPs)
chr5 (214-505)||(23171475-23171764)
chr5 (28-195)||(23171270-23171437)
[»] chr8 (6 HSPs)
chr8 (279-412)||(39460796-39460929)
chr8 (305-417)||(30873412-30873526)
chr8 (322-409)||(9208650-9208738)
chr8 (304-359)||(25128164-25128219)
chr8 (302-359)||(1282917-1282973)
chr8 (322-359)||(37437843-37437880)
[»] chr4 (2 HSPs)
chr4 (280-412)||(27587691-27587823)
chr4 (311-352)||(28038093-28038134)
[»] scaffold0018 (1 HSPs)
scaffold0018 (304-412)||(30178-30288)
[»] chr7 (4 HSPs)
chr7 (290-393)||(39586500-39586603)
chr7 (322-412)||(16664493-16664585)
chr7 (322-412)||(17638863-17638955)
chr7 (310-383)||(6455459-6455533)
[»] chr2 (2 HSPs)
chr2 (326-412)||(22302387-22302476)
chr2 (322-359)||(13913847-13913884)
[»] chr1 (4 HSPs)
chr1 (290-359)||(17606161-17606228)
chr1 (311-359)||(14188514-14188562)
chr1 (322-359)||(14485497-14485534)
chr1 (311-359)||(18297382-18297430)
[»] chr3 (2 HSPs)
chr3 (285-402)||(49785829-49785946)
chr3 (368-412)||(55273466-55273511)
[»] scaffold0013 (1 HSPs)
scaffold0013 (322-408)||(94447-94535)
[»] chr6 (2 HSPs)
chr6 (311-383)||(19986837-19986910)
chr6 (311-394)||(12176298-12176382)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 214 - 505
Target Start/End: Original strand, 23171475 - 23171764
Alignment:
Q  214 aaaagaaaaatagaattatagagatccaataaatataatttttctctgattcaaccagnnnnnnntatgaaggtctaagttagcaagtgtgtgcatcttt 313  Q
    ||||||| |||||||||||||||| |||||||||| ||||| ||||||||||||||||       |||||||||||||| ||||||||| |  |||||||    
T  23171475 aaaagaacaatagaattatagagacccaataaataaaatttgtctctgattcaaccagaaaaaaatatgaaggtctaagctagcaagtgcg--catcttt 23171572  T
Q  314 ttattggaacaaaaatatcattcatctatattatttaaaactaatacatggggtttactttaataattttattataaaatatttgttaaattgcaccaaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23171573 ttattggaacaaaaatatcattcatctatattatttaaaactaatacatggggtttactttaataattttattataaaatatttgttaaattgcaccaaa 23171672  T
Q  414 ttacagtaatattaatggtcgtgaacacgacatttatagatctaaaagacgttttattttcatcattggatatataaatataacgtccactc 505  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23171673 ttacagtaatattaatggctgtgaacacgacatttatagatctaaaagacgttttattttcatcattggatatataaatataacgtccactc 23171764  T

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Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 23171270 - 23171437
Alignment:
Q  28 taaaagagttaagagcatcgataatggtagtaaattaaaaaagatatttaaacgaattttacatgtacacatttatttatgattt--aaaaagaaaaatc 125  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||  ||||| |||||||    
T  23171270 taaaagagtta-gagcatcgataatggtagtaaattaaaaatgatctttaaacgaattttacatgtatacatttatttatgatttaaaaaaaaaaaaatc 23171368  T
Q  126 tatcaaggactcaataactttaattatagtaaattaaaaataatacttaaatagatccactaatatatgc 195  Q
    |||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  23171369 tatcaaggactcaataacttcaattataataaactaaaaat-atacttaaatagatccactaatatatgc 23171437  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 412
Target Start/End: Complemental strand, 39460929 - 39460796
Alignment:
Q  279 tatgaaggtctaagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaat 377  Q
    |||||||||| ||||||||||  |||  || ||||||||| | ||||||||||| ||||||| |||||||||||||||||| | || || |||||||| |    
T  39460929 tatgaaggtccaagttagcaaaagtg--cacctttttatttggacaaaaatatccttcatctttattatttaaaactaatagcttgagggttactttagt 39460832  T
Q  378 aatttt-attataaaatatttgttaaattgcaccaa 412  Q
    |||||| |||| || | ||||||||| |||||||||    
T  39460831 aattttcattaaaacagatttgttaacttgcaccaa 39460796  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 305 - 417
Target Start/End: Original strand, 30873412 - 30873526
Alignment:
Q  305 tgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt-attataaaatatttgttaa 402  Q
    ||||| |||||||| | ||||||||||| ||||||| |||||||||||| |||||   || || |||||||| ||||||| |||| || |||||||||||    
T  30873412 tgcatttttttatttggacaaaaatatctttcatctttattatttaaaattaatagtttgagggttactttagtaattttcattaaaacatatttgttaa 30873511  T
Q  403 attgcaccaaattac 417  Q
     ||||||||| ||||    
T  30873512 cttgcaccaatttac 30873526  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 409
Target Start/End: Original strand, 9208650 - 9208738
Alignment:
Q  322 acaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataattttattataaaatatttgttaaattgcac 409  Q
    ||||| ||||| ||||||| |||||||||||||||||| |  | || |||||||| |||||| |||| || ||||||||||| ||||||    
T  9208650 acaaagatatccttcatctttattatttaaaactaatagctagagggttactttagtaatttcattaaaacatatttgttaatttgcac 9208738  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 25128164 - 25128219
Alignment:
Q  304 gtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata 359  Q
    ||||| ||||| ||| | |||||||||||||| |||| ||||||||||||||||||    
T  25128164 gtgcaccttttcatttggacaaaaatatcattaatctttattatttaaaactaata 25128219  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 1282917 - 1282973
Alignment:
Q  302 gtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata 359  Q
    |||||| | |||||||| ||||||||| ||||||||||| |||| |||||||||||||    
T  1282917 gtgtgcctatttttatttgaacaaaaa-atcattcatctttattttttaaaactaata 1282973  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 37437880 - 37437843
Alignment:
Q  322 acaaaaatatcattcatctatattatttaaaactaata 359  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  37437880 acaaaaataccattcatctttattatttaaaactaata 37437843  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 412
Target Start/End: Complemental strand, 27587823 - 27587691
Alignment:
Q  280 atgaaggtctaagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaata 378  Q
    ||||||||| ||||||||||  |||| |  ||||||||  | ||||||||||| || || |||||||||||||||||||| | || || |||||||| ||    
T  27587823 atgaaggtccaagttagcaaaagtgtcc--ctttttatatggacaaaaatatcctttatttatattatttaaaactaatagcttgagggttactttagta 27587726  T
Q  379 atttt-attataaaatatttgttaaattgcaccaa 412  Q
    ||||| |||| || ||||||||||| |||||||||    
T  27587725 attttcattaaaacatatttgttaatttgcaccaa 27587691  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 28038093 - 28038134
Alignment:
Q  311 tttttattggaacaaaaatatcattcatctatattatttaaa 352  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  28038093 tttttatttggacaaaaatatcattcatctttattatttaaa 28038134  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 30178 - 30288
Alignment:
Q  304 gtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt-attataaaatatttgtta 401  Q
    ||||| ||||| ||| | ||||||||||| ||||||| |||||||||||||||||| | || |  |||||||| ||||||| |||| || ||||||||||    
T  30178 gtgcaccttttcatttggacaaaaatatccttcatctttattatttaaaactaatagcttgagcgttactttagtaattttcattaaaacatatttgtta 30277  T
Q  402 aattgcaccaa 412  Q
    | |||||||||    
T  30278 acttgcaccaa 30288  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 39586603 - 39586500
Alignment:
Q  290 aagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaat-acatggggtttactttaataa-ttttatta 387  Q
    ||||||||||||||   || ||||| ||| | ||||||||||||||||||| ||||||||||||||||| || || || |||||||| ||| ||||||||    
T  39586603 aagttagcaagtgtt--caccttttcatttggacaaaaatatcattcatctttattatttaaaactaataacttgagggttactttagtaatttttatta 39586506  T
Q  388 taaaat 393  Q
    ||||||    
T  39586505 taaaat 39586500  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 16664493 - 16664585
Alignment:
Q  322 acaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataa-ttttattataaaatatttgttaaattgcaccaa 412  Q
    ||||||||| | ||||||| ||||||| |||||||||| | || || |||||||||||| |||||| ||||||||||||||||  ||||||||    
T  16664493 acaaaaataaccttcatctttattattaaaaactaatagcttgagggttactttaataacttttatgataaaatatttgttaatctgcaccaa 16664585  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 17638863 - 17638955
Alignment:
Q  322 acaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataa-ttttattataaaatatttgttaaattgcaccaa 412  Q
    ||||||||| | ||||||| ||||||| |||||||||| | || || |||||||||||| |||||| ||||||||||||||||  ||||||||    
T  17638863 acaaaaataaccttcatctttattattaaaaactaatagcttgagggttactttaataacttttatgataaaatatttgttaatctgcaccaa 17638955  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 6455459 - 6455533
Alignment:
Q  310 ctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt 383  Q
    ||||||||| | ||||||||||| ||||||| |||||||||||||||||| | || || |||||||| |||||||    
T  6455459 ctttttatttggacaaaaatatccttcatctttattatttaaaactaatagcttgaggattactttagtaatttt 6455533  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 412
Target Start/End: Complemental strand, 22302476 - 22302387
Alignment:
Q  326 aaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt--attataaaatatttgttaaattgcaccaa 412  Q
    ||||||||||||||| |||||||||||||||||| | || || |||||||| |||||||  |||| || ||||||||||| |||||||||    
T  22302476 aaatatcattcatctttattatttaaaactaatagcttgagggttactttagtaattttgcattaaaacatatttgttaacttgcaccaa 22302387  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 13913884 - 13913847
Alignment:
Q  322 acaaaaatatcattcatctatattatttaaaactaata 359  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13913884 acaaaaatatcattcatctttattatttaaaactaata 13913847  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 17606228 - 17606161
Alignment:
Q  290 aagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata 359  Q
    |||||||||||||||   ||||||||||| | ||||||||| ||||||||| ||||||||||||||||||    
T  17606228 aagttagcaagtgtga--atctttttatttggacaaaaataccattcatctttattatttaaaactaata 17606161  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 14188562 - 14188514
Alignment:
Q  311 tttttattggaacaaaaatatcattcatctatattatttaaaactaata 359  Q
    |||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  14188562 tttttatttggacaaaaatatcattcatctttattatttaaaactaata 14188514  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 14485497 - 14485534
Alignment:
Q  322 acaaaaatatcattcatctatattatttaaaactaata 359  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  14485497 acaaaaatatcattcatctttattatttaaaactaata 14485534  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 18297382 - 18297430
Alignment:
Q  311 tttttattggaacaaaaatatcattcatctatattatttaaaactaata 359  Q
    |||||||| | ||||||||||  ||||||| ||||||||||||||||||    
T  18297382 tttttatttggacaaaaatatttttcatctttattatttaaaactaata 18297430  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 49785829 - 49785946
Alignment:
Q  285 ggtctaagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaat-acatggggtttactttaataatttt 383  Q
    ||||||||||||||| ||||  || ||||| | | | ||||||||||||||||||| |||||||||||| |||| || ||  | ||| |||| |||||||    
T  49785829 ggtctaagttagcaaatgtg--caccttttcaattggacaaaaatatcattcatctttattatttaaaattaataacgtgaaggttaatttagtaatttt 49785926  T
Q  384 -attataaaatatttgttaa 402  Q
     |||||||||||||||||||    
T  49785927 cattataaaatatttgttaa 49785946  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 55273511 - 55273466
Alignment:
Q  368 ttactttaataatttt-attataaaatatttgttaaattgcaccaa 412  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||||    
T  55273511 ttactttagtaatttttattataaaatatttgttaagttgcaccaa 55273466  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 94535 - 94447
Alignment:
Q  322 acaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt-attataaaatatttgttaaattgca 408  Q
    ||||||||||| ||||||| ||||||||||||||||||   || |  |||||||||||||||| |||| || ||||||||||| |||||    
T  94535 acaaaaatatccttcatctttattatttaaaactaatagtttgagagttactttaataattttcattaaaacatatttgttaacttgca 94447  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 19986910 - 19986837
Alignment:
Q  311 tttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt 383  Q
    |||||||| | ||||||||| ||||||||  |||||||||||||||||| | || || |||| |||||||||||    
T  19986910 tttttatttggacaaaaataacattcatcattattatttaaaactaatagcttgagggttacattaataatttt 19986837  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 394
Target Start/End: Original strand, 12176298 - 12176382
Alignment:
Q  311 tttttattggaacaaaaatatcattcatctatattatttaaaactaataca-tggggtttactttaataattttattataaaata 394  Q
    |||||||| | |||||||  ||||||| || ||||||||||||||| |||| || || |||||||  ||| ||||||||||||||    
T  12176298 tttttatttggacaaaaaagtcattcacctttattatttaaaactattacattgagggttacttttgtaactttattataaaata 12176382  T

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