View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_18 (Length: 476)
Name: NF18054_low_18
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 12 - 322
Target Start/End: Original strand, 5520083 - 5520393
Alignment:
| Q |
12 |
ataatacttcatcagtttcttatataatacaagtcattttagtaaataatacacaaattaatagagatttcaatatgaacaaattttgcagggactaaaa |
111 |
Q |
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| T |
5520083 |
ataatacttcatcagtttcttatataatacaagtcattttagtaaataatacacaaattaatagagatttcaatatgaacaaattttgcagggactaaaa |
5520182 |
T |
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| Q |
112 |
taaaatacagaagatcaaaagtaaaaagttgtagactcgtataagaacgcaaaaccagaaaattatatatttgcagaaactaaatgcatatttaaaccta |
211 |
Q |
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| T |
5520183 |
taaaatacagaagatcaaaagtaaaaagttgtagactcgtataagaacgcaaaaccagaaaattatatatttgcagagactaaatgcatatttaaaccta |
5520282 |
T |
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| Q |
212 |
tgataaattacctgcacatcgttcgtttttacttgaaataagcttctaaatgacttcctcataccatcattctcattacctgtggaatggaagcaacata |
311 |
Q |
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| T |
5520283 |
tgataaattacctgcgcatcgttcatttttacttgaaataagcttctaaatgacttcctcagaccatcattctcattacctgtggaatggaagcaacata |
5520382 |
T |
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| Q |
312 |
gtacaaagagt |
322 |
Q |
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| T |
5520383 |
gtacaaagagt |
5520393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 383 - 460
Target Start/End: Original strand, 5520454 - 5520531
Alignment:
| Q |
383 |
gagaatatgcatgttagggcaaattatgttttaatcaagatttccttcacaatatactaaaatattaatggacctttt |
460 |
Q |
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| T |
5520454 |
gagaatatgcatgttagggcaaattatgttttaatcaagatttccttcacaatatactagaatattaatggacctttt |
5520531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 32311804 - 32311863
Alignment:
| Q |
78 |
atttcaatatgaacaaattttgcagggactaaaataaaatacagaagatcaaaagtaaaaa |
138 |
Q |
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| T |
32311804 |
attttaatatgaataaattttgcaaagactaaaataaattaca-aggatcaaaagtaaaaa |
32311863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 10140842 - 10140886
Alignment:
| Q |
74 |
agagatttcaatatgaacaaattttgcagggactaaaataaaata |
118 |
Q |
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| T |
10140842 |
agagacttcaatatgaacatattttgtaggaactaaaataaaata |
10140886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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