View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_low_19 (Length: 456)
Name: NF18054_low_19
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_19 |
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| [»] scaffold0245 (2 HSPs) |
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| [»] scaffold0229 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 9 - 442
Target Start/End: Original strand, 1302723 - 1303156
Alignment:
| Q |
9 |
gacaagaataataacaatcttgaaatttacataagacccatgagttatgcatatccacaatttcaaacattgcatgtcattttgtatgatactcgataga |
108 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1302723 |
gacaagaataataacaatcttgaaatttacacaagacccatgagttatgcatatcctaaatttcaaacattgcatgtcattttgtatgatactggataga |
1302822 |
T |
|
| Q |
109 |
cccaccattctttcaaatgtgtaaagtagcatacaagtacaccattgtgtgaaaatcacacaacagttaggctataacttagaacctacaaagcaaatat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1302823 |
cccaccattctttcaaatgtgtaaagtagcatacaagtacaccattgtgtgaaaatcacacaacagttaggctataacttagaacctacaaagcaaatat |
1302922 |
T |
|
| Q |
209 |
gtagagtataatactcacttgcacctcggatgttgatcacagcctataaagtagccagaaccaaatctagttactttaaatatcagtgtgccttccgtac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1302923 |
gtagagtataatactcacttgcacctcggatgttgatcacagcctataaagtagccagaaccaaatctagttactttaaatatcagtgtgccttccgtac |
1303022 |
T |
|
| Q |
309 |
aactgaaacaagtcaaataagaagttatcaagagaatatctgacaaacaaatcaggcagtatataatgaacgcaatcaacaaaccatttttctacaaaca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1303023 |
aactgaaacaagtcaaataagaagttatcaagagaatatctgacaaacaaatcaggcagtatataatgaacgcaatcaacaaaccatttttctacaaaca |
1303122 |
T |
|
| Q |
409 |
aaatcagcataatcacattcaaaacacaaaattt |
442 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
1303123 |
aaatcagcataatcacattcaaaacacaaaattt |
1303156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 144 - 442
Target Start/End: Original strand, 1283553 - 1283846
Alignment:
| Q |
144 |
agtacaccattgtgtgaaaatcacacaacagttaggctataacttagaacctacaaagcaaatatgtagagtataatactcacttgcacctcggatgttg |
243 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1283553 |
agtacaccattgtgtgaaaatcaca--acagttaggctataacttagaacctacaaagcaaatatgtag--tataatactcacttgcacctcggatgttg |
1283648 |
T |
|
| Q |
244 |
atcacagcctataaagtagccagaaccaaatctagttactttaaatatcagtgtgccttccgtacaactgaaacaagtcaaataagaagttatcaagaga |
343 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1283649 |
atcacagcctataaagtagccagaaccaaatctacttactttaaatatcagtgtgccttccgtacaactgaaacaagtcaaataagaagttatcaagaga |
1283748 |
T |
|
| Q |
344 |
atatctgacaaacaaatcaggcagtatataatgaacgcaatcaacaaaccatttttctacaaacaaaatcagcataatcacattcaaaacacaaaattt |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1283749 |
atatctgacaaacaaatcaggcagtatataatgaatgcaatcaacaaacca-ttttctacaaacaaaatcagcataatcacattcaaaacacaaaattt |
1283846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 144 - 378
Target Start/End: Original strand, 1282522 - 1282752
Alignment:
| Q |
144 |
agtacaccattgtgtgaaaatcacacaacagttaggctataacttagaacctacaaagcaaatatgtagagtataatactcacttgcacctcggatgttg |
243 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1282522 |
agtacaccattgtgtgaaaatcaca--acagttaggctataacttagaacctacaaagcaaatatgtag--tataatactcacttgcacctcggatgttg |
1282617 |
T |
|
| Q |
244 |
atcacagcctataaagtagccagaaccaaatctagttactttaaatatcagtgtgccttccgtacaactgaaacaagtcaaataagaagttatcaagaga |
343 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1282618 |
atcacagcctataaagtagccagaaccaaatctacttactttaaatatcagtgtgccttccgtacaactgaaacaagtcaaataagaagttatcaagaga |
1282717 |
T |
|
| Q |
344 |
atatctgacaaacaaatcaggcagtatataatgaa |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
1282718 |
atatctgacaaacaaatcaggcagtatataatgaa |
1282752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 1282129 - 1282170
Alignment:
| Q |
110 |
ccaccattctttcaaatgtgtaaagtagcatacaagtacacc |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1282129 |
ccaccattcttccaaatgtgtaaagtagcatacaagtacacc |
1282170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 1283160 - 1283201
Alignment:
| Q |
110 |
ccaccattctttcaaatgtgtaaagtagcatacaagtacacc |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1283160 |
ccaccattcttccaaatgtgtaaagtagcatacaagtacacc |
1283201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 144 - 442
Target Start/End: Original strand, 8202 - 8495
Alignment:
| Q |
144 |
agtacaccattgtgtgaaaatcacacaacagttaggctataacttagaacctacaaagcaaatatgtagagtataatactcacttgcacctcggatgttg |
243 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8202 |
agtacaccattgtgtgaaaatcaca--acagttaggctataacttagaacctacaaagcaaatatgtag--tataatactcacttgcacctcggatgttg |
8297 |
T |
|
| Q |
244 |
atcacagcctataaagtagccagaaccaaatctagttactttaaatatcagtgtgccttccgtacaactgaaacaagtcaaataagaagttatcaagaga |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8298 |
atcacagcctataaagtagccagaaccaaatctacttactttaaatatcagtgtgccttccgtacaactgaaacaagtcaaataagaagttatcaagaga |
8397 |
T |
|
| Q |
344 |
atatctgacaaacaaatcaggcagtatataatgaacgcaatcaacaaaccatttttctacaaacaaaatcagcataatcacattcaaaacacaaaattt |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8398 |
atatctgacaaacaaatcaggcagtatataatgaatgcaatcaacaaacca-ttttctacaaacaaaatcagcataatcacattcaaaacacaaaattt |
8495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 7809 - 7850
Alignment:
| Q |
110 |
ccaccattctttcaaatgtgtaaagtagcatacaagtacacc |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7809 |
ccaccattcttccaaatgtgtaaagtagcatacaagtacacc |
7850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 144 - 442
Target Start/End: Original strand, 8530 - 8823
Alignment:
| Q |
144 |
agtacaccattgtgtgaaaatcacacaacagttaggctataacttagaacctacaaagcaaatatgtagagtataatactcacttgcacctcggatgttg |
243 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8530 |
agtacaccattgtgtgaaaatcaca--acagttaggctataacttagaacctacaaagcaaatatgtag--tataatactcacttgcacctcggatgttg |
8625 |
T |
|
| Q |
244 |
atcacagcctataaagtagccagaaccaaatctagttactttaaatatcagtgtgccttccgtacaactgaaacaagtcaaataagaagttatcaagaga |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8626 |
atcacagcctataaagtagccagaaccaaatctacttactttaaatatcagtgtgccttccgtacaactgaaacaagtcaaataagaagttatcaagaga |
8725 |
T |
|
| Q |
344 |
atatctgacaaacaaatcaggcagtatataatgaacgcaatcaacaaaccatttttctacaaacaaaatcagcataatcacattcaaaacacaaaattt |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8726 |
atatctgacaaacaaatcaggcagtatataatgaatgcaatcaacaaacca-ttttctacaaacaaaatcagcataatcacattcaaaacacaaaattt |
8823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 8137 - 8178
Alignment:
| Q |
110 |
ccaccattctttcaaatgtgtaaagtagcatacaagtacacc |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8137 |
ccaccattcttccaaatgtgtaaagtagcatacaagtacacc |
8178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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