View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_low_22 (Length: 435)
Name: NF18054_low_22
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_22 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 15427789 - 15428204
Alignment:
| Q |
1 |
atgaaataatgaacggtgcgaaaccattgacgtagtttctaattcaggtggtaatttagatttaatttgcataagaaaacagaaattttaggaaaactct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15427789 |
atgaaataatgaacggtgcgaaaccattgacgtagtttctaattcaggtggtaatttagatttaatttgcataagaaaacagaaattttaggaaaactct |
15427888 |
T |
|
| Q |
101 |
caattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaactgataattatttgaattgtatgcatcggggttcgt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15427889 |
caattaacgaggtccaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaactgataattatttgaattgtatgcatcggggttcgt |
15427988 |
T |
|
| Q |
201 |
gaagttacacttgtggtgctagctcaatatgatgcttacgtttgtaagagtaactgatatttgttccttcatatttctggcgctttgagggtgttctgct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
15427989 |
gaagttacacttgtggtgctagctcaatatgatgcttacgtttgtaagagtaactgatatttgttccttcatatttctggcgctttgtgggtgttctgct |
15428088 |
T |
|
| Q |
301 |
ctttgtgttgatggttttgctattacatttggtcctgaatctgagtgacttcacttgtagctttttcttgaaaagctacagcattaatattttgaaattt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
15428089 |
ctttgtgttgatggttttgctattacatttggtcctgaatctgagtgacttcacttgtagctttttcttgaaaagctacagcaataatattttgaaattt |
15428188 |
T |
|
| Q |
401 |
cggccctagtgtaata |
416 |
Q |
| |
|
||||||||||||||| |
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|
| T |
15428189 |
tggccctagtgtaata |
15428204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 15483699 - 15483941
Alignment:
| Q |
1 |
atgaaataatgaacggtgcgaaaccattgacgtagtttctaattcaggtggtaatttagatttaatttgcataagaaaacagaaattttaggaaaactct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15483699 |
atgaaataatgaacggtgcgaaaccattgacgtagtttctaattcaggtggtaatttagatttaatttgcataagaaaacagaaattttaggaaaactct |
15483798 |
T |
|
| Q |
101 |
caattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaactgataattatttgaattgtatgcatcggggttcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
15483799 |
caattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgaaaacattgtagtaactgataattatttgaattgta--catcggggttcgt |
15483896 |
T |
|
| Q |
201 |
gaagttacacttgtggtgctagctcaatatgatgcttacgtttgt |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15483897 |
gaagttacacttgtggtgctacctcaatatgatgcttacgtttgt |
15483941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 230 - 416
Target Start/End: Original strand, 15486413 - 15486599
Alignment:
| Q |
230 |
tgatgcttacgtttgtaagagtaactgatatttgttccttcatatttctggcgctttgagggtgttctgctctttgtgttgatggttttgctattacatt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15486413 |
tgatgcttacgtttgtaagagtaactgatatttgttccttcatatttctggcgctttgagggtgttctgctctttgtgttgatggttttgctattacatt |
15486512 |
T |
|
| Q |
330 |
tggtcctgaatctgagtgacttcacttgtagctttttcttgaaaagctacagcattaatattttgaaatttcggccctagtgtaata |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
15486513 |
tggtcctgaatctgagtgacttcacttgtagctttttcttgaaaagctacagcaataatattttgaaattttggccctagtgtaata |
15486599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 15534642 - 15534854
Alignment:
| Q |
3 |
gaaataatgaacggtgcgaaaccattgacgtagtttctaattcaggtggtaatttagatttaatttgcataagaaaacagaaattttaggaaaactctca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
15534642 |
gaaataatgaacggtgcgaaaccattgacgtagtttctaattcagggggtgatttagatttaatttgcagaagaaaacacaaattttaggaaaactctca |
15534741 |
T |
|
| Q |
103 |
attaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaactgataattatttgaattgtatgcatc-ggggttcgtg |
201 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| || |
|
|
| T |
15534742 |
attaacaaggtcgaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaactgataattatttgaattctatgcatcagaggttcatg |
15534841 |
T |
|
| Q |
202 |
aagttacacttgt |
214 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15534842 |
aagttacacttgt |
15534854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 15481001 - 15480777
Alignment:
| Q |
5 |
aataatgaacggtgcgaaaccattgacgtagtttctaattcaggtggtaatttagatttaatttgcataagaaaacagaaattttaggaaaactctcaat |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | |||||| ||| |||||||||||||||||| ||||||| | ||| |||||||||||||||||| |
|
|
| T |
15481001 |
aataatgaacggtgcgaaaccattgtcgtagtttccagttcagggggtgatttagatttaatttgcaaaagaaaatacaaaatttaggaaaactctcaat |
15480902 |
T |
|
| Q |
105 |
taacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaactgataattatttgaattgtatgcatcggggttcg-tgaa |
203 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| | |||| |
|
|
| T |
15480901 |
taacgaggtcgaatgatgaaaatggatggattatgcacttaaatgagaacattgtagtaattgataattatttgaattctatgcatcggggtttgatgaa |
15480802 |
T |
|
| Q |
204 |
gttacacttgtggtgctagctcaat |
228 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
15480801 |
gttacacttgtggtgttagctcaat |
15480777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 15447379 - 15447516
Alignment:
| Q |
91 |
ggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaactgataattatttgaattgtatgcat |
190 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15447379 |
ggaatactctcaattaacgaggtcgaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaactgataattatttgaattctatgcat |
15447478 |
T |
|
| Q |
191 |
cggggttcgtgaagttacacttgtggtgctagctcaat |
228 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15447479 |
cggggttcatgaagttacacttgtggtgctagctcaat |
15447516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 16944297 - 16944423
Alignment:
| Q |
64 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta |
163 |
Q |
| |
|
|||||||| ||||||| | | ||||||| ||||||||||||||| ||||||||| ||||||||||| | ||| || ||| |||||||||||||||| || |
|
|
| T |
16944297 |
aatttgcagaagaaaatacagattttagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattgtgtactagaatgagaacattgtacta |
16944396 |
T |
|
| Q |
164 |
actgataattatttgaattgtatgcat |
190 |
Q |
| |
|
|||||| |||| ||||| ||||||| |
|
|
| T |
16944397 |
actgattgttatatgaatattatgcat |
16944423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 15450829 - 15450955
Alignment:
| Q |
64 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta |
163 |
Q |
| |
|
||||||| ||||||| | | ||| ||| ||||||||||||||| ||||||||| ||||||||||| | |||||||||| ||||||||||||| || || |
|
|
| T |
15450829 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactggaatgagaacattatatta |
15450928 |
T |
|
| Q |
164 |
actgataattatttgaattgtatgcat |
190 |
Q |
| |
|
|||||| |||| ||||| ||||||| |
|
|
| T |
15450929 |
actgattgttatatgaatattatgcat |
15450955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 15489717 - 15489843
Alignment:
| Q |
64 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta |
163 |
Q |
| |
|
||||||| ||||||| | | ||| ||| |||||||||||||| ||||||||| ||||||||||| | |||||||||| |||||||||||||||| || |
|
|
| T |
15489717 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattagtaaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta |
15489816 |
T |
|
| Q |
164 |
actgataattatttgaattgtatgcat |
190 |
Q |
| |
|
|||||| |||| ||||| ||||||| |
|
|
| T |
15489817 |
actgattgttatatgaatattatgcat |
15489843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 15557758 - 15557884
Alignment:
| Q |
64 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta |
163 |
Q |
| |
|
||||||| ||||||| | | ||| ||| |||||||||||||| ||||||||| ||||||||||| | |||||||||| |||||||||||||||| || |
|
|
| T |
15557758 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattagtaaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta |
15557857 |
T |
|
| Q |
164 |
actgataattatttgaattgtatgcat |
190 |
Q |
| |
|
|||||| |||| ||||| ||||||| |
|
|
| T |
15557858 |
actgattgttatatgaatattatgcat |
15557884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 15431420 - 15431521
Alignment:
| Q |
64 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta |
163 |
Q |
| |
|
||||||| ||||||| | | ||| ||| ||||||||||||||| ||||||||| ||||||||||| | ||||||||| |||||||||||||||| || |
|
|
| T |
15431420 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcacaagaatgagaacattgtatta |
15431519 |
T |
|
| Q |
164 |
ac |
165 |
Q |
| |
|
|| |
|
|
| T |
15431520 |
ac |
15431521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 15431323 - 15431418
Alignment:
| Q |
64 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgagaacattgt |
159 |
Q |
| |
|
||||||| ||||||| | | ||| ||| ||||||||||||||| ||||||||| ||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
15431323 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcacaagaatgagaacattgt |
15431418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 15480605 - 15480563
Alignment:
| Q |
230 |
tgatgcttacgtttgtaagagtaactgatatttgttccttcat |
272 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
15480605 |
tgatgcttacatctgtaagagtaactgatatttgttccttcat |
15480563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 15447688 - 15447753
Alignment:
| Q |
230 |
tgatgcttacgtttgtaagagtaactgatatttgttccttcatatttctggcgctttgagggtgtt |
295 |
Q |
| |
|
|||||||| | | |||||| || ||||| |||| |||||| || |||||||||||||||||||||| |
|
|
| T |
15447688 |
tgatgcttgcatctgtaagcgtgactgaaattttttcctttatttttctggcgctttgagggtgtt |
15447753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 15490019 - 15490072
Alignment:
| Q |
225 |
caatatgatgcttacgtttgtaagagtaactgatatttgttccttcatatttct |
278 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
15490019 |
caatatgatgtttatgtcagtaagagtaactgacatttgttccttcatttttct |
15490072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 15558060 - 15558113
Alignment:
| Q |
225 |
caatatgatgcttacgtttgtaagagtaactgatatttgttccttcatatttct |
278 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
15558060 |
caatatgatgtttatgtcagtaagagtaactgacatttgttccttcatttttct |
15558113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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