View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_low_23 (Length: 435)

Name: NF18054_low_23
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_low_23
NF18054_low_23
[»] chr3 (15 HSPs)
chr3 (35-417)||(47829416-47829796)
chr3 (38-117)||(13330435-13330514)
chr3 (35-112)||(16256202-16256279)
chr3 (35-117)||(7627304-7627386)
chr3 (35-112)||(2811287-2811364)
chr3 (35-112)||(39688234-39688311)
chr3 (36-112)||(19195948-19196024)
chr3 (40-104)||(30228987-30229051)
chr3 (52-117)||(53347717-53347782)
chr3 (38-105)||(25157660-25157727)
chr3 (35-117)||(34440159-34440240)
chr3 (38-87)||(16292759-16292808)
chr3 (62-108)||(23526952-23526998)
chr3 (62-108)||(23527026-23527072)
chr3 (38-108)||(48086014-48086081)
[»] chr8 (10 HSPs)
chr8 (36-117)||(9238601-9238682)
chr8 (36-112)||(28838275-28838351)
chr8 (36-112)||(26489219-26489295)
chr8 (38-117)||(22721600-22721679)
chr8 (35-112)||(16995814-16995891)
chr8 (38-104)||(16003281-16003347)
chr8 (40-109)||(38187615-38187687)
chr8 (46-109)||(6798666-6798729)
chr8 (35-117)||(14095092-14095174)
chr8 (35-112)||(37229773-37229850)
[»] chr7 (22 HSPs)
chr7 (36-117)||(13608954-13609035)
chr7 (35-117)||(22518017-22518099)
chr7 (36-117)||(15826112-15826193)
chr7 (40-112)||(24576365-24576437)
chr7 (36-102)||(12346036-12346102)
chr7 (35-112)||(13553278-13553355)
chr7 (35-112)||(21065778-21065855)
chr7 (40-112)||(31010998-31011070)
chr7 (38-112)||(2413148-2413222)
chr7 (35-117)||(6715720-6715802)
chr7 (36-108)||(5241614-5241686)
chr7 (44-112)||(16728509-16728577)
chr7 (44-112)||(17705581-17705649)
chr7 (36-111)||(39561532-39561607)
chr7 (66-112)||(8524993-8525039)
chr7 (35-117)||(12625458-12625540)
chr7 (35-90)||(25770212-25770267)
chr7 (66-112)||(41799463-41799509)
chr7 (44-112)||(17715597-17715665)
chr7 (68-109)||(9652332-9652373)
chr7 (41-90)||(25775783-25775832)
chr7 (35-112)||(38455572-38455649)
[»] chr4 (17 HSPs)
chr4 (35-117)||(13505263-13505345)
chr4 (38-112)||(38650047-38650121)
chr4 (35-108)||(6826291-6826364)
chr4 (35-112)||(634059-634136)
chr4 (35-117)||(42562646-42562728)
chr4 (38-112)||(44098840-44098914)
chr4 (38-111)||(16469673-16469746)
chr4 (35-112)||(51718696-51718773)
chr4 (38-112)||(12232013-12232087)
chr4 (35-117)||(39463537-39463619)
chr4 (38-112)||(41969159-41969233)
chr4 (35-112)||(40451494-40451567)
chr4 (38-112)||(29905711-29905785)
chr4 (36-109)||(35425536-35425611)
chr4 (35-117)||(32309807-32309889)
chr4 (68-109)||(13523357-13523398)
chr4 (64-112)||(850093-850141)
[»] chr6 (4 HSPs)
chr6 (38-112)||(17754980-17755054)
chr6 (35-109)||(31020976-31021053)
chr6 (36-117)||(19222826-19222906)
chr6 (35-112)||(6287778-6287855)
[»] chr2 (12 HSPs)
chr2 (35-117)||(31118964-31119046)
chr2 (35-111)||(11807636-11807712)
chr2 (35-117)||(37939634-37939716)
chr2 (35-112)||(940073-940150)
chr2 (41-112)||(20931224-20931295)
chr2 (38-112)||(5308104-5308178)
chr2 (35-117)||(18206552-18206634)
chr2 (35-117)||(27333191-27333273)
chr2 (38-112)||(31627162-31627236)
chr2 (60-112)||(15424162-15424214)
chr2 (38-112)||(27756969-27757043)
chr2 (64-112)||(28033786-28033834)
[»] scaffold0010 (1 HSPs)
scaffold0010 (38-117)||(34222-34301)
[»] chr5 (9 HSPs)
chr5 (36-111)||(27348093-27348168)
chr5 (35-112)||(11799575-11799652)
chr5 (38-112)||(1817815-1817889)
chr5 (35-112)||(22552797-22552874)
chr5 (66-112)||(6702935-6702981)
chr5 (38-95)||(11478889-11478946)
chr5 (63-112)||(24211063-24211112)
chr5 (35-117)||(2741069-2741151)
chr5 (35-117)||(13272224-13272306)
[»] chr1 (14 HSPs)
chr1 (35-114)||(24965459-24965538)
chr1 (41-117)||(3377331-3377407)
chr1 (36-104)||(20007278-20007346)
chr1 (35-112)||(28443465-28443542)
chr1 (35-112)||(49033167-49033244)
chr1 (60-112)||(23348847-23348899)
chr1 (41-112)||(43784806-43784877)
chr1 (35-117)||(28540812-28540894)
chr1 (35-105)||(37313314-37313384)
chr1 (35-112)||(50907747-50907824)
chr1 (36-112)||(32646313-32646389)
chr1 (35-117)||(33298649-33298731)
chr1 (66-117)||(44488612-44488663)
chr1 (35-117)||(48997181-48997263)
[»] scaffold0046 (1 HSPs)
scaffold0046 (35-114)||(74780-74859)
[»] scaffold0373 (1 HSPs)
scaffold0373 (35-108)||(13909-13982)
[»] scaffold0262 (1 HSPs)
scaffold0262 (39-112)||(9709-9782)
[»] scaffold1212 (1 HSPs)
scaffold1212 (35-117)||(1247-1329)
[»] scaffold0408 (1 HSPs)
scaffold0408 (35-117)||(5434-5516)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 35 - 417
Target Start/End: Complemental strand, 47829796 - 47829416
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcggaggatattggcgttttga 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  47829796 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttaactgcaatatggtagtttgcggagggtattggcgttttga 47829697  T
Q  135 tgaaatagttggttaccttaggcttttttaaggggttccgcttcctaaatttggtagaggtgatatatcatctttgatatg---tcgatgatacttttta 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||   |||| |||||||||||    
T  47829696 tgaaatagttggttaccttaggcttttttaaggggttccgcttcctaaatttggtagaggtgatatctcatcttcgatatgtcatcgaagatacttttta 47829597  T
Q  232 ttatagtagatgcgtgagtggaaaacttgtagagtatgaaagcacttaagatggttggaattaatatatggtttgaaagtgaacttttcaaaaagtaaat 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47829596 ttatagtagatgcgtgagtggaaaacttgtagagtatgaaagcacttaagatggttcgaattaatatatggtttgaaagtgaacttttcaaaaagtaaat 47829497  T
Q  332 tgtgttttttaggaatgtagcatacttagcttgataaagtgtaaaacgggaatgatgccattcattaatcttggtctacctgtagg 417  Q
    |||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47829496 tgtgttttttaggaatgtggcata-----cttgataaagtgtaaaacgggaatgatgccattcattaatcttggtctacctgtagg 47829416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 13330435 - 13330514
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13330435 tgttaatgatgaaattagttagaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttacgga 13330514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 16256279 - 16256202
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  16256279 gattgttaatgatgaaattagttagaaattggtttgttagtgttgattatagttagtttgactgcaatgtggcagttt 16256202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 7627304 - 7627386
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||||||||| ||||    
T  7627304 gattgttaatgatgaaattagttaaaaattggtttgttattgttgattatagttagttttattgcaatatggtagtttacgga 7627386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 2811364 - 2811287
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  2811364 gattgttaaagatgaaattagttagaaattggtttgttatggttgattatagttagtttgactgcaatgtgttagttt 2811287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 39688311 - 39688234
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||| ||||||||| |  |  |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  39688311 gattgttaatgatgtaattagttagagctatgtttgttaatgttgatgatagttaatttgactgcaatgtggtagttt 39688234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 19195948 - 19196024
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||| |||||||||||||| ||| ||  ||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  19195948 attgctaatgatgaaattatttagaatatggtttgttaatgttgattatagtatgtttgacttcaatgtggtagttt 19196024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 30229051 - 30228987
Alignment:
Q  40 ttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgt 104  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||| | ||||| ||||||||    
T  30229051 ttaatgatgaaattagttagaaattggattgttaatgttgattatagtgaatttgagtgcaatgt 30228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 53347782 - 53347717
Alignment:
Q  52 ttagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||||| ||||  |||||||||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  53347782 ttagttagaaatatgtttgttaatgtcgattatagttagtttgactgtaatgtggtattttacgga 53347717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 25157727 - 25157660
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtg 105  Q
    ||||||||||||||||||||| |||| |  ||||| |||||||||||||| | ||||| |||||||||    
T  25157727 tgttaatgatgaaattagttagaaatggaattgttgatgttgattatagtgattttgagtgcaatgtg 25157660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 34440240 - 34440159
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||| ||| || |||||||||| | || ||||||||||| ||||||||| |  ||||||||||||||||||||||| ||||    
T  34440240 gattgtgaattatcaaattagttagatat-ggtttgttaattttgattataatatgtttgactgcaatgtggtagtttacgga 34440159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 16292808 - 16292759
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagt 87  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||| ||||    
T  16292808 tgttaatgataaaattagttagaaattggattgttaatgttgattctagt 16292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 23526952 - 23526998
Alignment:
Q  62 attggtttgttaatgttgattatagttagtttgactgcaatgtggta 108  Q
    ||||| ||||||||| |||||||||| ||||||| ||||||||||||    
T  23526952 attggattgttaatgatgattatagtgagtttgagtgcaatgtggta 23526998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 23527072 - 23527026
Alignment:
Q  62 attggtttgttaatgttgattatagttagtttgactgcaatgtggta 108  Q
    ||||| ||||||||| |||||||||| ||||||| ||||||||||||    
T  23527072 attggattgttaatgatgattatagtgagtttgagtgcaatgtggta 23527026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 48086081 - 48086014
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggta 108  Q
    |||||||||||||| |||||| ||||||| ||   ||||||||||| | | |||||||| |||||||||||    
T  48086081 tgttaatgatgaaactagttataaattggatt---aatgttgattacattgagtttgacagcaatgtggta 48086014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 9238682 - 9238601
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9238682 attgttaatgatgaaattaattataaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttacgga 9238601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 28838351 - 28838275
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||    
T  28838351 attgttaatgatgaaattagttagaaattggattgttaatgttgattatagtgagtttgagtgcaatgtggtagttt 28838275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 26489219 - 26489295
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| || |||| ||||||||    
T  26489219 attgttaatgatgaaattagttaaaaattgatttgttaatgttgattatagtaaatttgagtgaaatgcggtagttt 26489295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 22721600 - 22721679
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  22721600 tgttaatgatgacattagttagaaatatgtttgttaattttgattatagttagtttgactgcaatgtggcagtttacgga 22721679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 16995814 - 16995891
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||| |||| |||| |||||| |||||||  |||||||||||||||||||| ||||||||||||||||    
T  16995814 gattgttaatgatggaatttgttagaaattgatttgttatagttgattatagttagtttgattgcaatgtggtagttt 16995891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 16003281 - 16003347
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgt 104  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| ||||||||    
T  16003281 tgttaatgatgaaattatttagaaattggattgttaatgttgattatagtaagtttgagtgcaatgt 16003347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 38187615 - 38187687
Alignment:
Q  40 ttaatgatgaaattagttaaaaattggtttgttaatgttg---attatagttagtttgactgcaatgtggtag 109  Q
    ||||||||||||||||||| ||||||| ||||||||||||   |||||||| ||||| | |||||||||||||    
T  38187615 ttaatgatgaaattagttagaaattggattgttaatgttgatcattatagtgagtttcaatgcaatgtggtag 38187687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 6798729 - 6798666
Alignment:
Q  46 atgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtag 109  Q
    ||||||||||||| ||||| | ||||| |||||||||| ||| ||||||| |||||||||||||    
T  6798729 atgaaattagttagaaattagattgttgatgttgattagagtaagtttgagtgcaatgtggtag 6798666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 14095092 - 14095174
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||| || ||||||||||||||| ||  |||||||||| |||||||||||||  ||||||   |||||||||||||| ||||    
T  14095092 gattgctagtgatgaaattagttagaatatggtttgttattgttgattatagtatgtttgagaacaatgtggtagtttacgga 14095174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 37229850 - 37229773
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||| ||| || |||||||||| ||  |||||||||||| ||||||||| |  |||||| |||||||| |||||||    
T  37229850 gattgtgaattatcaaattagttagaatatggtttgttaattttgattataatatgtttgattgcaatgtcgtagttt 37229773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 13608954 - 13609035
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  13608954 attgttaatgatgaaattagttagaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtaatttacgga 13609035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 22518099 - 22518017
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  22518099 gattgttaatgatgaaattagttagaaattggtttgttattgttgattatagttagtttgattgcaatgtggtagtttacgga 22518017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 15826193 - 15826112
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  15826193 attgttaatgatgaaattagttagaaattgatttgttaatgttgattatagttagtttgactgcaatgtgatagtttacgga 15826112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 24576365 - 24576437
Alignment:
Q  40 ttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||    
T  24576365 ttaacgatgaaattagttaaaaattggtttgttaatgttgaatatagtatgtttgactgcagtgtggtagttt 24576437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 12346036 - 12346102
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaat 102  Q
    ||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||||    
T  12346036 attgttaatgatgaaattagttagaaatttgcttgttaatgttgattattgttagtttgactgcaat 12346102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 13553278 - 13553355
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||| ||||||||| ||||  ||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  13553278 gattgttaatgatgtaattagttagaaatatgtttgttaatgttaattatagttaatttgactgcaatgtgatagttt 13553355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 21065855 - 21065778
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||| |||||||||||||||||||||  | ||||||||||||||||||||||  |||||||| ||||||||||||||    
T  21065855 gattgctaatgatgaaattagttaaaatatagtttgttaatgttgattatagtatgtttgactacaatgtggtagttt 21065778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 31011070 - 31010998
Alignment:
Q  40 ttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||||||||| ||||||| || ||||| ||||||||||| ||||||| ||||||||||||||||    
T  31011070 ttaatgatgaaattagttagaaattggattattaatattgattatagtaagtttgagtgcaatgtggtagttt 31010998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 2413222 - 2413148
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||| || ||||||| ||||||||| ||||||    
T  2413222 tgttaatgatgaaattagttagaaattggatcgttaatgttgattatcgtgagtttgagtgcaatgtgatagttt 2413148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 6715802 - 6715720
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||||||||| ||||||| |||| |||||| ||||||| ||| | ||||||||||||||||||||||||| |||||| ||||    
T  6715802 gattgttaatggtgaaatttgttagaaattgatttgttattgtaggttatagttagtttgactgcaatgtgatagtttacgga 6715720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 5241614 - 5241686
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggta 108  Q
    ||||||||||||||||||||||| ||||||| || ||||||||||||||||| | || || ||||||||||||    
T  5241614 attgttaatgatgaaattagttagaaattggattattaatgttgattatagtgatttagagtgcaatgtggta 5241686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 16728577 - 16728509
Alignment:
Q  44 tgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| |||||| | |||||||    
T  16728577 tgatgaaattacttagaaattggattgttaatgttgattatagtgagtttgagtgcaatttagtagttt 16728509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 17705649 - 17705581
Alignment:
Q  44 tgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| |||||| | |||||||    
T  17705649 tgatgaaattacttagaaattggattgttaatgttgattatagtgagtttgagtgcaatttagtagttt 17705581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 39561532 - 39561607
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtt 111  Q
    ||||||| ||||||| ||||||| |||||||||| |||||||||||| |||| |||| || |||||||| ||||||    
T  39561532 attgttagtgatgaagttagttagaaattggtttattaatgttgattgtagtgagttcgagtgcaatgttgtagtt 39561607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 8525039 - 8524993
Alignment:
Q  66 gtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  8525039 gtttgttaatgttgattatagttaatttgactgcaatgtggttgttt 8524993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 12625458 - 12625540
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||| |||||||||||||||||| ||  || ||| ||||||||  |||||||  ||||||||||||||||||||||| ||||    
T  12625458 gattgctaatgatgaaattagttagaatatgatttattaatgttagttatagtatgtttgactgcaatgtggtagtttacgga 12625540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 25770267 - 25770212
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttag 90  Q
    ||||| ||||||| |||||||||| |||||||||| ||| ||||||||||||||||    
T  25770267 gattgctaatgataaaattagttagaaattggttttttattgttgattatagttag 25770212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 41799509 - 41799463
Alignment:
Q  66 gtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  41799509 gtttgttaatgttgatgatagttaatttgactacaatgtggtagttt 41799463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 17715665 - 17715597
Alignment:
Q  44 tgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||| ||| || |||| ||||||||| |||||||||| ||||||| |||||| | |||||||    
T  17715665 tgatgaaattacttagaagttggattgttaatgctgattatagtgagtttgagtgcaatttagtagttt 17715597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 9652373 - 9652332
Alignment:
Q  68 ttgttaatgttgattatagttagtttgactgcaatgtggtag 109  Q
    |||||||| ||||||||||| ||||||| |||||||||||||    
T  9652373 ttgttaatattgattatagtgagtttgagtgcaatgtggtag 9652332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 25775832 - 25775783
Alignment:
Q  41 taatgatgaaattagttaaaaattggtttgttaatgttgattatagttag 90  Q
    ||||||| |||||||||| | |||||||| ||| ||||||||||||||||    
T  25775832 taatgataaaattagttagagattggttttttattgttgattatagttag 25775783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 38455572 - 38455649
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||| ||| || ||||||||||  |  |||||||||||| ||||||||| |  |||||||| ||||||||||||||    
T  38455572 gattgtgaattatcaaattagttagcatatggtttgttaattttgattataatatgtttgactacaatgtggtagttt 38455649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 13505345 - 13505263
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  13505345 gattgttaatgatgaaattagttagaaattggttcgttattgttgattatagttagtttgtctgcaatgtggtagtttacgga 13505263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 38650047 - 38650121
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  38650047 tgttaatgatgaaattagtttgaaatatgtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 38650121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 6826364 - 6826291
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggta 108  Q
    |||||||||||||||||||||||| |||||| |||| || |||||||  |||||||||||||||||||||||||    
T  6826364 gattgttaatgatgaaattagttagaaattgatttgctattgttgatcgtagttagtttgactgcaatgtggta 6826291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 634136 - 634059
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||  ||||||||| |  |  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  634136 gattgttaatgatataattagttagagctatgtttgttaatgttgatgatagttagtttgactgcaatgtggtagttt 634059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 42562728 - 42562646
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||| |||||||||||||||||| ||  ||||| ||||||||||||||||||  ||||||  ||||||||||||||| ||||    
T  42562728 gattgctaatgatgaaattagttagaatatggttcgttaatgttgattatagtatgtttgagagcaatgtggtagtttacgga 42562646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 44098840 - 44098914
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||| |||||||||| ||||||  |||||||||||||||||||| ||||||| || ||| |||||||||    
T  44098840 tgttaatgattaaattagttagaaattgaattgttaatgttgattatagtgagtttgagtggaatttggtagttt 44098914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 16469673 - 16469746
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtt 111  Q
    |||||||||||| |||||||| ||||||| ||||||||||| |||||||| | ||||| |||||| ||||||||    
T  16469673 tgttaatgatgacattagttagaaattggattgttaatgtttattatagtgattttgagtgcaatctggtagtt 16469746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 51718696 - 51718773
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||| | ||||||||| |  |  |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  51718696 gattgttaatgaagtaattagttagagctatgtttgttaatgttgatgatagttaatttgactgcaatgtggtagttt 51718773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 12232087 - 12232013
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||| |||||||| |||| ||||||  |||||||||||||||||| | ||||||| ||||||||| ||||||    
T  12232087 tgttaataatgaaattcgttagaaattgaattgttaatgttgattatattgagtttgagtgcaatgtgttagttt 12232013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 39463537 - 39463619
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||| ||| || |||||||||| ||  |||||||||||| ||||||||| |  ||||||||||||||||||||||| ||||    
T  39463537 gattgtgaattatcaaattagttagaatatggtttgttaatattgattataatatgtttgactgcaatgtggtagtttacgga 39463619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 41969233 - 41969159
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||| ||||||| ||||||| ||| |||||||||||||||| |||||||   |||||| |||||||    
T  41969233 tgttaatgatgaacttagttagaaattggattgataatgttgattatagtaagtttgagcacaatgttgtagttt 41969159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 40451494 - 40451567
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||| ||||||||| |    | | ||||||||||||| ||||||| ||||||||||||||||||||||    
T  40451494 gattgttaatgatgtaattagttaga----gttatgttaatgttgatgatagttaatttgactgcaatgtggtagttt 40451567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 29905711 - 29905785
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||| ||||| |||| ||||||  |||||||||||| ||| ||| ||||| | ||||||||||||||||    
T  29905711 tgttaatgataaaatttgttataaattgaattgttaatgttggttagagtaagtttcagtgcaatgtggtagttt 29905785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 35425611 - 35425536
Alignment:
Q  36 attgttaatgatgaaattagttaaaaa--ttggtttgttaatgttgattatagttagtttgactgcaatgtggtag 109  Q
    |||||||||| ||||||||||||||||  |||  ||||| |||||||||||||| || |||| |||||| ||||||    
T  35425611 attgttaatggtgaaattagttaaaaaaattgaattgttcatgttgattatagtgagattgagtgcaatatggtag 35425536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 32309889 - 32309807
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||| ||| || ||||||||||  |  |||||||||||| ||||||||| |  ||||||||||||||| ||||||| ||||    
T  32309889 gattgtgaattatcaaattagttagcatatggtttgttaattttgattataatatgtttgactgcaatgtagtagtttacgga 32309807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 13523398 - 13523357
Alignment:
Q  68 ttgttaatgttgattatagttagtttgactgcaatgtggtag 109  Q
    |||||||| ||||||||||| ||||||| |||||||||||||    
T  13523398 ttgttaatattgattatagtgagtttgagtgcaatgtggtag 13523357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 850141 - 850093
Alignment:
Q  64 tggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||| ||||||||| |   ||||||||||||||||||||||    
T  850141 tggtttgttaattttgattataatatatttgactgcaatgtggtagttt 850093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 17754980 - 17755054
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||    
T  17754980 tgttaatgatgaaattagttagaaattggattgttaatgttgattatagtgagtttgattgcaatgtggtagttt 17755054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 31020976 - 31021053
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggt---ttgttaatgttgattatagttagtttgactgcaatgtggtag 109  Q
    |||| ||||||||||||||||||| ||||||||   |||||||||||||| ||||| || |||| |||||||||||||    
T  31020976 gatttttaatgatgaaattagttagaaattggtaatttgttaatgttgatcatagtgagattgattgcaatgtggtag 31021053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 19222826 - 19222906
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||| |||||||||||||||||| ||  || |||| ||||||||||||||||  ||||| ||||||||||||||||| ||||    
T  19222826 attgctaatgatgaaattagttagaatatgatttgctaatgttgattatagtatgtttg-ctgcaatgtggtagtttacgga 19222906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 6287855 - 6287778
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||| ||| |||||||||||||  |  |||||||||||| ||||||||| |  |||||||| ||||||||||||||    
T  6287855 gattgtgaattatgaaattagttagcatatggtttgttaattttgattataatatgtttgactacaatgtggtagttt 6287778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 31119046 - 31118964
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||| ||| ||||    
T  31119046 gattgttaatgatgaaattagttagaaatatgtttgttaatgttgattatagttagtttgactacaatgtggtactttacgga 31118964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 11807712 - 11807636
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtt 111  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  11807712 gattgttaatgataaaattagttagaaattggttagttaatgttgattatagtatgtttgactgcaatgtggtagtt 11807636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 37939716 - 37939634
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||| ||||||  |||||||| |||||||||||||| ||||    
T  37939716 gattgttaatgatgaaatttgttagaaattgatttgttaatgttgaatatagtatgtttgactacaatgtggtagtttacgga 37939634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 940073 - 940150
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||| ||||||||| || |  |||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  940073 gattgttaatgatgtaattagttagaactatgtttgttaatgttgatgatagttaatttgattgcaatgtggtagttt 940150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 20931224 - 20931295
Alignment:
Q  41 taatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||| |||||||||| ||  ||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  20931224 taatgataaaattagttagaatatggtttgttaatgttgattatagtatgtttgattgcaatgtggtagttt 20931295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 5308178 - 5308104
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||| |||||||||| ||||||  || ||||||||||||||||| ||||||| ||||||| ||||||||    
T  5308178 tgttaatgattaaattagttagaaattgaattcttaatgttgattatagtgagtttgagtgcaatgcggtagttt 5308104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 18206634 - 18206552
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||||||||||||||||| ||| ||  || |||||||||||||||||||||  |||||||||||  |||||||||| ||||    
T  18206634 gattgttaatgatgaaattacttagaatatgttttgttaatgttgattatagtatgtttgactgcatcgtggtagtttacgga 18206552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 27333191 - 27333273
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||| ||||||| |||||||||| ||  ||||||||||||||||||||||||  ||||||||||||  ||||||||| ||||    
T  27333191 gattgctaatgataaaattagttagaatatggtttgttaatgttgattatagtatgtttgactgcaacatggtagtttacgga 27333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 31627162 - 31627236
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||| || ||| ||||||| || |||||||||||||    
T  31627162 tgttaatgatgaaattagttagaaattggattgttaacgttgaatagagtaagtttgagtgtaatgtggtagttt 31627236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 15424214 - 15424162
Alignment:
Q  60 aaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  15424214 aaattagtttgttaatgttgattatagttagtttgtttgcaatgtggtagttt 15424162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 27757043 - 27756969
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||| ||||||||||||| ||||||  |||||||||||||||| ||| ||||| | |||||| | |||||||    
T  27757043 tgttaattatgaaattagttagaaattgaattgttaatgttgattaaagtgagtttaagtgcaatattgtagttt 27756969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 28033786 - 28033834
Alignment:
Q  64 tggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||| ||||||||| |  |||| ||||||||||||||||||    
T  28033786 tggtttgttaattttgattataatatgtttaactgcaatgtggtagttt 28033834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 34301 - 34222
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||||||||||||| |||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  34301 tgttaatgatgaaattggttagaaatatgtttgttaatgttgattatagttagtttgactacaatgtggtagtttacgga 34222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 27348168 - 27348093
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtt 111  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||| |||||||||||||||    
T  27348168 attgttaatgatgaaattagttagaaattgaattgttaatgttgattatagtgagtttgagtgcaatgtggtagtt 27348093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 11799575 - 11799652
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||||||||| | | |||||||||||||| | || |||||||||||||||||||||||||||||||||    
T  11799575 gattgttaatgatgaaattaatcagaaattggtttgttattttttattatagttagtttgactgcaatgtggtagttt 11799652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 1817889 - 1817815
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||||| ||||||||| ||||||    
T  1817889 tgttaatgatgaaattagttagaaattggattgttaatgttgattagagtgagtttgagtgcaatgtgatagttt 1817815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 22552874 - 22552797
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||||||||| |||| ||||  ||||||||||||||  |||||||||||||||||||||||| ||||||    
T  22552874 gattgttaatgatgaaatttgttagaaatatgtttgttaatgttgtatatagttagtttgactgcaatgtgatagttt 22552797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 6702935 - 6702981
Alignment:
Q  66 gtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  6702935 gtttgttaatgttgatgatagttaatttgactgcaatgtggtagttt 6702981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 11478946 - 11478889
Alignment:
Q  38 tgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttga 95  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||||||| | |||||||    
T  11478946 tgttaatgatgaaattagttataaattggattgttaatattgattataatgagtttga 11478889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 24211112 - 24211063
Alignment:
Q  63 ttggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||| |||||||||||||||||||| |||||||||||||||| |||||||    
T  24211112 ttggattgttaatgttgattatagtaagtttgactgcaatgtagtagttt 24211063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 2741069 - 2741151
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||| ||| || ||||||||||  |  |||||||||||| ||||||||| |  |||||||| |||||||||||||| ||||    
T  2741069 gattgtgaattatcaaattagttagcatatggtttgttaattttgattataatatgtttgactccaatgtggtagtttacgga 2741151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 13272224 - 13272306
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||| ||| || ||||||||||  |  |||||||||||| ||||||||| |  |||||| |||||||||||||||| ||||    
T  13272224 gattgtaaattatcaaattagttagcatatggtttgttaattttgattataatatgtttgagtgcaatgtggtagtttacgga 13272306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 24965538 - 24965459
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgc 114  Q
    ||||||||||||||||||| |||| ||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  24965538 gattgttaatgatgaaatttgttagaaatatgtttgttaatgttgattatagttagttagactgcaatgtgatagtttgc 24965459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 3377407 - 3377331
Alignment:
Q  41 taatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||  ||||||||||||| ||||||||| ||||    
T  3377407 taatgatgaaattagttagaatatggtttgttaatgttgattatagtatgtttgactgcaatatggtagtttacgga 3377331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 20007346 - 20007278
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgt 104  Q
    |||||||||||||||||| |||| ||||  ||||||||||||||||||||||||||| |||||||||||    
T  20007346 attgttaatgatgaaatttgttagaaatatgtttgttaatgttgattatagttagttagactgcaatgt 20007278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 28443465 - 28443542
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||| ||||||||| |  |  |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  28443465 gattgttaatgatgtaattagttagagctatgtttgttaatgttgatgatagttaatttgactgcaatgtggtagttt 28443542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 49033244 - 49033167
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||| ||||||||| |  |  |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  49033244 gattgttaatgatgtaattagttagagctatgtttgttaatgttgatgatagttaatttgactgcaatgtggtagttt 49033167  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 23348899 - 23348847
Alignment:
Q  60 aaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  23348899 aaattagtttgttaatgttgattatagttagtttgactgcaacgtggtagttt 23348847  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 43784877 - 43784806
Alignment:
Q  41 taatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||||||||||| ||  |||||||||| |||||||||||||  |||||||||||||||| ||||||    
T  43784877 taatgatgaaattagttagaatatggtttgttattgttgattatagtatgtttgactgcaatgtgatagttt 43784806  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 28540894 - 28540812
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||| ||| || |||||||||| ||  |||||||||||||||||||||| |  ||||||||||||||||||||||| ||||    
T  28540894 gattgtgaattatcaaattagttagaatatggtttgttaatgttgattataatatgtttgactgcaatgtggtagtttacgga 28540812  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 37313384 - 37313314
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtg 105  Q
    ||||||| |||||||||||||||||||  || ||||||||||||||||| |||  ||||||||||||||||    
T  37313384 gattgttgatgatgaaattagttaaaatatgatttgttaatgttgattagagtatgtttgactgcaatgtg 37313314  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 50907747 - 50907824
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||| ||| || |||||||||| ||  |||||||||||||||||||||| |  |||||||||||||||||||||||    
T  50907747 gattgtgaattatcaaattagttagaatatggtttgttaatgttgattataatatgtttgactgcaatgtggtagttt 50907824  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 32646313 - 32646389
Alignment:
Q  36 attgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    ||||||||||||| |||  ||||  ||||| |||||||  ||||||| |||||||| ||||||||||||||||||||    
T  32646313 attgttaatgatggaatctgttagcaattgatttgttatagttgattgtagttagtctgactgcaatgtggtagttt 32646389  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 33298731 - 33298649
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||| ||| || ||||||||||  |  |||||||||||| ||||||||| |  ||||||||||||||||||||||| ||||    
T  33298731 gattgtgaattatcaaattagttagcatatggtttgttaattttgattataatatgtttgactgcaatgtggtagtttacgga 33298649  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 44488612 - 44488663
Alignment:
Q  66 gtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||||||| ||||||||| |  ||||||||||||||||||||||| ||||    
T  44488612 gtttgttaattttgattataatatgtttgactgcaatgtggtagtttacgga 44488663  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 48997181 - 48997263
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||| ||| || ||||||||||  |  |||||||||||| ||||||||| |  ||||||||| ||||||||||||| ||||    
T  48997181 gattgtgaattatcaaattagttagcatatggtttgttaattttgattataatatgtttgactgtaatgtggtagtttacgga 48997263  T

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Target: scaffold0046 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 74859 - 74780
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgc 114  Q
    ||||||| ||||||||||| |||| ||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  74859 gattgttgatgatgaaatttgttagaaatatgtttgttaatgttgattatagttagttagactgcaatgtgatagtttgc 74780  T

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Target: scaffold0373 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 13909 - 13982
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggta 108  Q
    |||||||||||||||||||||||| |||||| |||| || |||||||  |||||||||||||||||||||||||    
T  13909 gattgttaatgatgaaattagttagaaattgatttgctattgttgatcgtagttagtttgactgcaatgtggta 13982  T

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Target: scaffold0262 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 9782 - 9709
Alignment:
Q  39 gttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagttt 112  Q
    |||||||||| |||||||||||| |  |||||||||||||||||||||||| |||||||| |||||||| ||||    
T  9782 gttaatgatgtaattagttaaaattatgtttgttaatgttgattatagttaatttgactgaaatgtggttgttt 9709  T

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Target: scaffold1212 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 1329 - 1247
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    |||||| ||| || |||||||||| ||  |||||||||||||||||||||| |  |||||||||||| |||||||||| ||||    
T  1329 gattgtgaattatcaaattagttagaatatggtttgttaatgttgattataatatgtttgactgcaaagtggtagtttacgga 1247  T

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Target: scaffold0408 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 5434 - 5516
Alignment:
Q  35 gattgttaatgatgaaattagttaaaaattggtttgttaatgttgattatagttagtttgactgcaatgtggtagtttgcgga 117  Q
    ||||| || ||||||||||||||| ||  |||||||||| |||||||||||||  ||||||   |||||||||||||| ||||    
T  5434 gattgctagtgatgaaattagttagaatatggtttgttattgttgattatagtatgtttgagaacaatgtggtagtttacgga 5516  T

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