View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_26 (Length: 406)
Name: NF18054_low_26
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_26 |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 6522439 - 6522053
Alignment:
| Q |
18 |
aattgatcaaaaagatgataacaatgaacacaataaaatcatcatcaacaaaattacagggacgacatttcttgacgtgttgcccttatctgcaaaaacc |
117 |
Q |
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| T |
6522439 |
aattgatcaaaaagatgataacaatgaacacaataaaatcaacatcaacaaaattacagggacgacatttcttgacgtgttgcccttatctgcaaaaacc |
6522340 |
T |
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| Q |
118 |
agaattaacacatagtgagacattaaatatttaatatatcaaagatatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgtt |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6522339 |
agaattaacaca--gtgagacattaaatatttaatatatcaaagatatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgtt |
6522242 |
T |
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| Q |
218 |
ttgtgcaaacggaggaggagttgagaaagatggcactggcacaggcaccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaattg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6522241 |
ttgtgcaaacggaggaggagttgagaaagatggcactggcacaggcaccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaattg |
6522142 |
T |
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| Q |
318 |
gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgatagattgaac |
406 |
Q |
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| T |
6522141 |
gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgatagattgaac |
6522053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 6512475 - 6512579
Alignment:
| Q |
298 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgat |
397 |
Q |
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| T |
6512475 |
gttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacccaacctgttgttacaacatcttgggattgctttgat |
6512574 |
T |
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| Q |
398 |
agatt |
402 |
Q |
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||||| |
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| T |
6512575 |
agatt |
6512579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 406
Target Start/End: Original strand, 6516870 - 6516982
Alignment:
| Q |
294 |
gttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctt |
393 |
Q |
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||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||| | ||| ||||||||||| ||| ||||| | |
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| T |
6516870 |
gttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcactcatcctgttgttacaacatattgcgatttcat |
6516969 |
T |
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| Q |
394 |
tgatagattgaac |
406 |
Q |
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||||||||||||| |
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| T |
6516970 |
tgatagattgaac |
6516982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 6506562 - 6506672
Alignment:
| Q |
298 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-ac-----ctattgttacaacaatttgaaatttc |
391 |
Q |
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|||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| || ||||||| ||||||||||| ||||| |
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| T |
6506562 |
gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc |
6506661 |
T |
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| Q |
392 |
tttgatagatt |
402 |
Q |
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| T |
6506662 |
tttgatagatt |
6506672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 6506438 - 6506501
Alignment:
| Q |
192 |
taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg |
255 |
Q |
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| T |
6506438 |
taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg |
6506501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 47778456 - 47778382
Alignment:
| Q |
318 |
gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttct |
392 |
Q |
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|||||| | ||||||||||| || |||||||||||||||||||| | |||||| |||||||| ||||||||||| |
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| T |
47778456 |
gtttcaaacctcaaattacagctaggtctaacaattctagcaccaatcctatttttacaacatcttgaaatttct |
47778382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 47788578 - 47788517
Alignment:
| Q |
318 |
gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaaca |
379 |
Q |
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| T |
47788578 |
gtttcaaacctcaaattacagcttggtctaataattctagcaccaatcctattgctacaaca |
47788517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 587 - 697
Alignment:
| Q |
298 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-ac-----ctattgttacaacaatttgaaatttc |
391 |
Q |
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|||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| || ||||||| ||||||||||| ||||| |
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| T |
587 |
gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc |
686 |
T |
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| Q |
392 |
tttgatagatt |
402 |
Q |
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||||||||||| |
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| T |
687 |
tttgatagatt |
697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 8240 - 8350
Alignment:
| Q |
298 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-ac-----ctattgttacaacaatttgaaatttc |
391 |
Q |
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|||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| || ||||||| ||||||||||| ||||| |
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| T |
8240 |
gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc |
8339 |
T |
|
| Q |
392 |
tttgatagatt |
402 |
Q |
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||||||||||| |
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| T |
8340 |
tttgatagatt |
8350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 463 - 526
Alignment:
| Q |
192 |
taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg |
255 |
Q |
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||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| |||||||||| |
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| T |
463 |
taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg |
526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 8116 - 8179
Alignment:
| Q |
192 |
taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg |
255 |
Q |
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||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| |||||||||| |
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| T |
8116 |
taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg |
8179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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