View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_low_29 (Length: 398)
Name: NF18054_low_29
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_29 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 220 - 398
Target Start/End: Original strand, 32483602 - 32483780
Alignment:
| Q |
220 |
tgaaaaacatcactgttatttagtagccctgaccaagaaagaaactgtttttcctcctctttcttagcacattccctctctctttcacatccacacatat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32483602 |
tgaaaaacatcactgttatttagtagccctgaccaagaaagaaactgtttttcctcctctttcttagcacattccctctctctttcacatccacacatat |
32483701 |
T |
|
| Q |
320 |
tctcacctcaatcactagctaccatcattttctttgtgattctttaattctatgtttagattattctagaatattaatt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32483702 |
tctcacctcaatcactagctaccatcattttctttgtgattctttaattctatgtttagattattctagaatattaatt |
32483780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 32483376 - 32483534
Alignment:
| Q |
2 |
acaaagagagaatcttttggtttagaggaattctctgaaaaagatagccaaatactgatgacatagttttggaactatatctgctaacaatccaaccgta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32483376 |
acaaagagagaatcttttggtttagaggaattctctgaaaaagatagccaaatactgatgacatagttttggaactatatctgctaacaatccaaccgta |
32483475 |
T |
|
| Q |
102 |
tcgattgcgtgtgtttatgttcaagcttaaaatctccaccatatttcatatctatcagc |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32483476 |
tcgattgcgtgtgtttatgttcaagcttaaaatctccaccatatttcatatctatcagc |
32483534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University