View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_low_3 (Length: 737)

Name: NF18054_low_3
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_low_3
NF18054_low_3
[»] chr5 (12 HSPs)
chr5 (554-723)||(40828356-40828529)
chr5 (51-183)||(40828823-40828956)
chr5 (409-489)||(40828594-40828674)
chr5 (214-271)||(22920865-22920922)
chr5 (210-271)||(43399374-43399435)
chr5 (207-303)||(16489126-16489227)
chr5 (320-361)||(40828722-40828763)
chr5 (19-68)||(40828982-40829031)
chr5 (215-271)||(43259888-43259944)
chr5 (210-332)||(5131268-5131390)
chr5 (242-313)||(6644823-6644894)
chr5 (231-326)||(27514474-27514569)
[»] chr4 (10 HSPs)
chr4 (220-327)||(32896590-32896697)
chr4 (217-361)||(43955566-43955715)
chr4 (226-318)||(21188096-21188188)
chr4 (222-318)||(27246243-27246339)
chr4 (249-331)||(37255033-37255115)
chr4 (214-293)||(4485263-4485342)
chr4 (237-332)||(48284310-48284400)
chr4 (236-313)||(4621881-4621958)
chr4 (236-303)||(6147440-6147506)
chr4 (242-312)||(23689371-23689441)
[»] chr8 (5 HSPs)
chr8 (215-293)||(3639841-3639919)
chr8 (216-313)||(2259780-2259877)
chr8 (214-312)||(35699646-35699744)
chr8 (237-313)||(18605222-18605298)
chr8 (193-239)||(11781584-11781630)
[»] chr2 (2 HSPs)
chr2 (210-326)||(5722770-5722891)
chr2 (236-356)||(36330431-36330551)
[»] chr7 (6 HSPs)
chr7 (214-271)||(19367121-19367178)
chr7 (220-292)||(16813804-16813871)
chr7 (236-313)||(23777067-23777144)
chr7 (247-313)||(35912124-35912190)
chr7 (221-271)||(10595954-10596004)
chr7 (226-271)||(10596092-10596137)
[»] chr3 (9 HSPs)
chr3 (214-271)||(55216839-55216896)
chr3 (193-272)||(867545-867624)
chr3 (214-293)||(41264822-41264901)
chr3 (193-265)||(54801614-54801686)
chr3 (242-312)||(34607373-34607443)
chr3 (247-353)||(36343745-36343851)
chr3 (214-271)||(40654116-40654173)
chr3 (215-271)||(8473260-8473316)
chr3 (248-326)||(48660138-48660216)
[»] chr6 (2 HSPs)
chr6 (237-324)||(33590743-33590830)
chr6 (214-326)||(20836622-20836734)
[»] chr1 (6 HSPs)
chr1 (214-287)||(22786629-22786707)
chr1 (216-355)||(52247386-52247515)
chr1 (217-268)||(15661595-15661646)
chr1 (227-265)||(34821642-34821680)
chr1 (236-293)||(8812426-8812483)
chr1 (422-490)||(36928204-36928273)
[»] scaffold0024 (1 HSPs)
scaffold0024 (193-262)||(60035-60104)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 1e-80; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 554 - 723
Target Start/End: Complemental strand, 40828529 - 40828356
Alignment:
Q  554 cccacccctacttaattgaacctataatttgcaatttgcttcttttttggtatttgagtaaaattgtacaattacttcatcaactgcagccttaaataaa 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40828529 cccacccctacttaattgaacctataatttgcaatttgcttcttttttggtatttgagtaaaattgtacaattacttcatcaactgcagccttaaataaa 40828430  T
Q  654 aaatataggtatggttgatggttcgtaggcac----ataccattctggttagaatttgtcctcgttattatatt 723  Q
    |||||||||||||||||||||||| |||||||    ||||||||||||||||||||||||||||||||||||||    
T  40828429 aaatataggtatggttgatggttcataggcacatatataccattctggttagaatttgtcctcgttattatatt 40828356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 40828956 - 40828823
Alignment:
Q  51 aactctttttctatgattgcaaaaaatggaatggactaagataggcaacnnnnnnnattggataatcgtgtgtgtggggg-tatgaatgggaagcctttt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||    
T  40828956 aactctttttctatgattgcaaaaaatggaatggactaagataggcaactttttttattggataatcgtgtgtgtggggggtatgaatgggaagcctttt 40828857  T
Q  150 gtgctaaaaatcttttcataatatttttattcta 183  Q
    ||||||||||||||||||||||||||||||||||    
T  40828856 gtgctaaaaatcttttcataatatttttattcta 40828823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 409 - 489
Target Start/End: Complemental strand, 40828674 - 40828594
Alignment:
Q  409 ccgaaccaagctgtttcgaaccgaacccaactgtttcgaatcgaaccgaactatttagttcagttccataattgttagtaa 489  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40828674 ccgaaccgaactgtttcgaaccgaacccaactgtttcgaatcgaaccgaactatttacttcagttccataattgttagtaa 40828594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 22920865 - 22920922
Alignment:
Q  214 gggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaac 271  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  22920865 gggatgaaaactgaaccaaactgaactatttgctaaatttaaaataactgaactgaac 22920922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 43399374 - 43399435
Alignment:
Q  210 gtttgggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaac 271  Q
    ||||| ||||||||||| |||||||| || | ||||||||||||||||||||||||||||||    
T  43399374 gtttgagatgaaaactggaccgaaccaaattgtttgctaaatttaaaataactgaaccgaac 43399435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 16489126 - 16489227
Alignment:
Q  207 tttgtttgggatgaaaactgaaccgaaccgaac-----tatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaa 301  Q
    |||||||||||||||||||||||||||||||||     |||||  |||||||||||||| ||||| ||| ||||  ||||| ||||| |||| || ||||    
T  16489126 tttgtttgggatgaaaactgaaccgaaccgaactgaattatttattaaatttaaaataattgaactgaatcaaacggtttgtattttaaactgaaccgaa 16489225  T
Q  302 ct 303  Q
    ||    
T  16489226 ct 16489227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 40828763 - 40828722
Alignment:
Q  320 aattgtttcgaaccgtaacaaactgttattattggtatcgtt 361  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  40828763 aattgtttcgaaccgtaacgaactgttattattggtatcgtt 40828722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 40829031 - 40828982
Alignment:
Q  19 caactattcttcgtcaaagagaggatgttttcaactctttttctatgatt 68  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  40829031 caactattcttcgtcaaagaaaagatgttttcaactctttttccatgatt 40828982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 43259944 - 43259888
Alignment:
Q  215 ggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaac 271  Q
    |||||||||||||| ||||| ||||| |||| |||||||||||||||||||| ||||    
T  43259944 ggatgaaaactgaatcgaactgaactgtttgttaaatttaaaataactgaactgaac 43259888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 210 - 332
Target Start/End: Complemental strand, 5131390 - 5131268
Alignment:
Q  210 gtttgggatgaaaactgaaccgaaccg-----aactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaacta 304  Q
    ||||||||||||||||||||||||| |     ||||||||||||||||||||||||  |||| ||||     ||||| ||||| ||||| ||  |||||     
T  5131390 gtttgggatgaaaactgaaccgaactgaactaaactatttgctaaatttaaaataatagaactgaac-----tgtttacatttcgaactgaactgaactg 5131296  T
Q  305 tttcaaaccaaaccgaattgtttcgaac 332  Q
    ||||||||| ||| ||| ||||||||||    
T  5131295 tttcaaaccgaactgaactgtttcgaac 5131268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 6644894 - 6644823
Alignment:
Q  242 tttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaacc 313  Q
    ||||||||||||||||||||||||  ||||| || | ||||||||| ||||| ||  ||||| |||||||||    
T  6644894 tttgctaaatttaaaataactgaattgaaccgaactatttgcatttcgaactgaactgaactgtttcaaacc 6644823  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 27514569 - 27514474
Alignment:
Q  231 gaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaaccgaattgtt 326  Q
    |||| ||||| |||| ||||||| |||||| ||||| |||| ||| ||||||||||| ||||| ||  ||| | ||||||||| ||||||| ||||    
T  27514569 gaactgaactgtttgttaaattttaaataattgaactgaactaaattgtttgcatttcgaactgaactgaattgtttcaaaccgaaccgaactgtt 27514474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 220 - 327
Target Start/End: Complemental strand, 32896697 - 32896590
Alignment:
Q  220 aaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaaccg 319  Q
    |||||| |||||||| ||||| |||||||||||||| ||||||||   ||||| || ||||||||||||||||| || |||| | ||| ||||| |||||    
T  32896697 aaaactaaaccgaactgaactgtttgctaaatttaagataactgagttgaaccgaactgtttgcattttgaactgaaccgaattgttttaaaccgaaccg 32896598  T
Q  320 aattgttt 327  Q
    ||||||||    
T  32896597 aattgttt 32896590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 361
Target Start/End: Complemental strand, 43955715 - 43955566
Alignment:
Q  217 atgaaaactgaaccgaaccgaa-----ctatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaa 311  Q
    ||||||||||||||||||||||     ||| ||| ||||||||||||||||||||  || | || ||||||||||| ||||| ||  ||||| || ||||    
T  43955715 atgaaaactgaaccgaaccgaattaaactacttgttaaatttaaaataactgaacttaatcgaactgtttgcatttcgaactgaacagaactgttccaaa 43955616  T
Q  312 ccaaaccgaattgtttcgaaccgtaacaaactgttattattggtatcgtt 361  Q
    || || |||| |||||||||||| | | || |||| ||||||||| ||||    
T  43955615 ccgaaacgaactgtttcgaaccgaaccgaattgttgttattggtaccgtt 43955566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 226 - 318
Target Start/End: Original strand, 21188096 - 21188188
Alignment:
Q  226 gaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaacc 318  Q
    ||||||||  ||||| |||| |||||||||||| | | ||||||| |||| |||||| ||||||||||||||| || | ||||||||||||||    
T  21188096 gaaccgaatggaactgtttgataaatttaaaattattaaaccgaatcaaactgtttgtattttgaactaaatcaaattctttcaaaccaaacc 21188188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 27246243 - 27246339
Alignment:
Q  222 aactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaacc 318  Q
    ||||||||||||  ||| | |||| |||||||||||| | | ||||||| |||| |||||| ||||||||||||||| || | ||||||||||||||    
T  27246243 aactgaaccgaattgaattgtttgataaatttaaaattattaaaccgaatcaaattgtttgtattttgaactaaatcaaattgtttcaaaccaaacc 27246339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 37255115 - 37255033
Alignment:
Q  249 aatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaaccgaattgtttcgaa 331  Q
    |||||||||||||||||| ||||| || ||||||||||| ||||| |||| || | ||||||||  ||||||| |||||||||    
T  37255115 aatttaaaataactgaactgaaccgaattgtttgcatttcgaactgaatcaaaatgtttcaaactgaaccgaactgtttcgaa 37255033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 4485263 - 4485342
Alignment:
Q  214 gggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaact 293  Q
    ||||| ||||||||||||||| ||| | ||||||| ||||||||||||||||  ||| | || |||||||||||| ||||    
T  4485263 gggataaaaactgaaccgaactgaattgtttgctagatttaaaataactgaaatgaatcgaactgtttgcattttaaact 4485342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 48284400 - 48284310
Alignment:
Q  237 aactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaaccgaattgtttcgaac 332  Q
    ||||||||| ||||||||||||||||||| |||||     |||||| |||||||  | || |||||| ||||||||||||||||| |||| |||||    
T  48284400 aactatttgttaaatttaaaataactgaatcgaac-----tgtttggattttgatttgaaccgaactgtttcaaaccaaaccgaactgttccgaac 48284310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 4621881 - 4621958
Alignment:
Q  236 gaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaacc 313  Q
    ||||| |||| ||||||||| ||||||| ||| ||||||| ||||||||||| ||||| ||  ||||| |||||||||    
T  4621881 gaactgtttgataaatttaatataactggaccaaaccaaattgtttgcatttcgaactgaactgaactgtttcaaacc 4621958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 6147506 - 6147440
Alignment:
Q  236 gaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaact 303  Q
    |||||||||| |||||||||| |||||||||| |||| || | ||||||||||||||| || ||||||    
T  6147506 gaactatttgataaatttaaa-taactgaaccaaaccgaactatttgcattttgaactgaaccgaact 6147440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 23689441 - 23689371
Alignment:
Q  242 tttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaac 312  Q
    |||||||||| |||||||| ||||  ||| |||| ||||||||||||||| | || |||||||||| ||||    
T  23689441 tttgctaaatctaaaataaatgaattgaatcaaattgtttgcattttgaattgaaccgaactattttaaac 23689371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 3639919 - 3639841
Alignment:
Q  215 ggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaact 293  Q
    |||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||| ||| | |||| ||||||||||    
T  3639919 ggatgaaaactgaaccgaactgaaatgtttgttaaatttaaaataactgaaccgaacaaaattatttgtattttgaact 3639841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 2259780 - 2259877
Alignment:
Q  216 gatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaacc 313  Q
    ||||||||||||||||||| ||| | |||| |||||||||||||| ||||||||| | || |||||||||||| || | || |||||| ||| |||||    
T  2259780 gatgaaaactgaaccgaactgaattgtttgttaaatttaaaataattgaaccgaatcgaactgtttgcattttaaattgaaccgaactgttttaaacc 2259877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 35699744 - 35699646
Alignment:
Q  214 gggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaac 312  Q
    ||||||||||||||||||||| ||| | |||| |||||||||||||| ||||| | |   || ||||||||||| ||||| || |||||| || |||||    
T  35699744 gggatgaaaactgaaccgaactgaattgtttgataaatttaaaataattgaactggattgaattgtttgcatttcgaactgaaccgaactgttgcaaac 35699646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 18605222 - 18605298
Alignment:
Q  237 aactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaacc 313  Q
    |||| ||||||||||||||||||| | ||| ||||| || ||||||||||| ||||| ||  ||||| |||||||||    
T  18605222 aactctttgctaaatttaaaataattaaactgaaccgaactgtttgcatttcgaactgaactgaactgtttcaaacc 18605298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 11781584 - 11781630
Alignment:
Q  193 ggggtggacataattttgtttgggatgaaaactgaaccgaaccgaac 239  Q
    ||||||| |||| ||| |||||||||||||||||||| |||||||||    
T  11781584 ggggtgggcatagtttggtttgggatgaaaactgaactgaaccgaac 11781630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 210 - 326
Target Start/End: Original strand, 5722770 - 5722891
Alignment:
Q  210 gtttgggatgaaaactgaaccgaacc-----gaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaacta 304  Q
    |||||||||||||| |||||||||||     ||| ||||||||||||||||||||||||||  ||||  || ||||||||||||||||  ||  |||||     
T  5722770 gtttgggatgaaaagtgaaccgaaccaaattgaattatttgctaaatttaaaataactgaattgaactgaattgtttgcattttgaacggaactgaactc 5722869  T
Q  305 tttcaaaccaaaccgaattgtt 326  Q
    |||| ||| |||||||||||||    
T  5722870 tttcgaactaaaccgaattgtt 5722891  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 236 - 356
Target Start/End: Complemental strand, 36330551 - 36330431
Alignment:
Q  236 gaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaaccgaattgtttcgaaccgt 335  Q
    |||||||||| |||| ||||||||||||||| ||| | || | ||||||||||||||| ||| ||||| ||||||||  ||  ||||||||||||| ||     
T  36330551 gaactatttgttaaaattaaaataactgaactgaatcgaactatttgcattttgaactgaattgaactgtttcaaactgaattgaattgtttcgaatcga 36330452  T
Q  336 aacaaactgttattattggta 356  Q
    |   |||||||||||||||||    
T  36330451 acggaactgttattattggta 36330431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 19367121 - 19367178
Alignment:
Q  214 gggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaac 271  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||    
T  19367121 gggatgaaaactgaatcgaactgaactgtttgctaaatttaaaataactgaactgaac 19367178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 16813871 - 16813804
Alignment:
Q  220 aaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaac 292  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||     ||||||||||||||||    
T  16813871 aaaactgaaccgaactgaactgtttgctaaatttaaaataactgaacagaac-----tgtttgcattttgaac 16813804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 23777067 - 23777144
Alignment:
Q  236 gaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaacc 313  Q
    ||||| ||||||||||||||||||| ||||| ||||  ||||||||| |||||||||| ||  ||||| |||||||||    
T  23777067 gaactgtttgctaaatttaaaataattgaactgaactgaaatgtttgtattttgaactgaactgaactgtttcaaacc 23777144  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 35912190 - 35912124
Alignment:
Q  247 taaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaacc 313  Q
    |||||||||||||||| |||| ||| ||| ||||||||||| ||||| || | ||||||||||||||    
T  35912190 taaatttaaaataacttaaccaaactaaattgtttgcatttcgaactgaaccaaactatttcaaacc 35912124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 10595954 - 10596004
Alignment:
Q  221 aaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaac 271  Q
    |||| |||| |||| ||||| ||||||||||||||||||||||||| ||||    
T  10595954 aaaccgaactgaactgaactgtttgctaaatttaaaataactgaactgaac 10596004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 10596092 - 10596137
Alignment:
Q  226 gaaccgaaccgaactatttgctaaatttaaaataactgaaccgaac 271  Q
    |||| |||| ||||| ||||||||||||||||||||||||| ||||    
T  10596092 gaactgaactgaactgtttgctaaatttaaaataactgaactgaac 10596137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 55216896 - 55216839
Alignment:
Q  214 gggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaac 271  Q
    |||||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||    
T  55216896 gggatgaaaactgaactgaactgaactatttgttaaatttaaaataactgaactgaac 55216839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 867624 - 867545
Alignment:
Q  193 ggggtggacataattttgtttgggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaacc 272  Q
    ||||||| |||| ||| |||  ||||||||| |||||| ||||||||| |||| |||||||||||||||||||| |||||    
T  867624 ggggtgggcatagtttggttccggatgaaaattgaaccaaaccgaactgtttggtaaatttaaaataactgaactgaacc 867545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 41264822 - 41264901
Alignment:
Q  214 gggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaact 293  Q
    |||||||||||||||| ||| |||||| |||| |||||||||||||| ||||| ||| | || |||||| ||||||||||    
T  41264822 gggatgaaaactgaactgaatcgaactgtttgttaaatttaaaataattgaactgaatcgaattgtttgtattttgaact 41264901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 54801614 - 54801686
Alignment:
Q  193 ggggtggacataattttgtttgggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaa 265  Q
    |||||||||||  ||  ||||||||||||||||||||||||   |||| ||||||||||||||||||| ||||    
T  54801614 ggggtggacatggttcagtttgggatgaaaactgaaccgaattaaactgtttgctaaatttaaaataattgaa 54801686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 34607373 - 34607443
Alignment:
Q  242 tttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaac 312  Q
    ||||||||||| |||| ||||||||| ||| ||| ||||||||||||||||  || |||||| ||||||||    
T  34607373 tttgctaaattcaaaaaaactgaaccaaactaaactgtttgcattttgaaccgaaccgaactgtttcaaac 34607443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 36343851 - 36343745
Alignment:
Q  247 taaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaaccgaattgtttcgaaccgtaacaaactgtt 346  Q
    |||||||||||||| ||||  |||| ||| ||||||||||||||| | ||  ||||| ||||||||||||| ||| |||| ||||| | | | |||||||    
T  36343851 taaatttaaaataattgaattgaactaaattgtttgcattttgaattgaactgaactgtttcaaaccaaactgaactgttccgaactgaaccgaactgtt 36343752  T
Q  347 attattg 353  Q
    || ||||    
T  36343751 atcattg 36343745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 40654116 - 40654173
Alignment:
Q  214 gggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaac 271  Q
    ||||| ||||||| ||||||| ||||| |||| |||||||||||||||||||| ||||    
T  40654116 gggataaaaactgtaccgaactgaactgtttgttaaatttaaaataactgaactgaac 40654173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 8473316 - 8473260
Alignment:
Q  215 ggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaac 271  Q
    |||||||||||||| ||||| ||||| |||||||||| |||| ||||||||| ||||    
T  8473316 ggatgaaaactgaatcgaactgaactgtttgctaaatctaaactaactgaactgaac 8473260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 48660138 - 48660216
Alignment:
Q  248 aaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaaccgaattgtt 326  Q
    ||||||||||||| ||||  ||| |||| ||||||||||| ||| | ||||||||| ||| |||||||||  |||||||    
T  48660138 aaatttaaaataattgaattgaatcaaattgtttgcatttcgaattgaatcgaactgttttaaaccaaactaaattgtt 48660216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 33590743 - 33590830
Alignment:
Q  237 aactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaaaccgaattg 324  Q
    |||||||| | ||||||||||||||||||||||||| || ||||||||||| ||||| ||  ||||| || |||||| ||| ||||||    
T  33590743 aactattttccaaatttaaaataactgaaccgaaccgaactgtttgcatttcgaacttaactgaactgttccaaaccgaactgaattg 33590830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 326
Target Start/End: Original strand, 20836622 - 20836734
Alignment:
Q  214 gggatgaaaactgaaccgaaccgaacta-----tttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttc 308  Q
    ||||||||||||||||||||| ||||||     |||||||||| |||||||||||||| ||||     ||||||||||| ||||| ||  ||||| ||||    
T  20836622 gggatgaaaactgaaccgaactgaactaaactgtttgctaaatctaaaataactgaactgaac-----tgtttgcatttcgaactgaacggaactgtttc 20836716  T
Q  309 aaaccaaaccgaattgtt 326  Q
    ||||| ||| ||| ||||    
T  20836717 aaaccgaactgaactgtt 20836734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 22786707 - 22786629
Alignment:
Q  214 gggatgaaaactgaaccgaaccgaacta-----tttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattt 287  Q
    |||||||||||||||||||||||||||      ||||||||||||||||||| ||||| |||||||| |||| ||||||    
T  22786707 gggatgaaaactgaaccgaaccgaactgaactgtttgctaaatttaaaataattgaactgaaccaaactgttcgcattt 22786629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 355
Target Start/End: Complemental strand, 52247515 - 52247386
Alignment:
Q  216 gatgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaactaaatcgaactatttcaaaccaa 315  Q
    |||||||| |||||||||| ||||| |||| |||||||||||||| ||||           |||||||||||||| || || | |||| ||||||||| |    
T  52247515 gatgaaaagtgaaccgaactgaactgtttgttaaatttaaaataattgaat----------tgtttgcattttgatctgaaccaaactgtttcaaaccga 52247426  T
Q  316 accgaattgtttcgaaccgtaacaaactgttattattggt 355  Q
    |  |||||||||||||| | | ||||||||||||||||||    
T  52247425 attgaattgtttcgaactgaaccaaactgttattattggt 52247386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 15661595 - 15661646
Alignment:
Q  217 atgaaaactgaaccgaaccgaactatttgctaaatttaaaataactgaaccg 268  Q
    |||||| |||||||||||  |||||||||||||||||||||||||| |||||    
T  15661595 atgaaatctgaaccgaactaaactatttgctaaatttaaaataactaaaccg 15661646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 34821642 - 34821680
Alignment:
Q  227 aaccgaaccgaactatttgctaaatttaaaataactgaa 265  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  34821642 aaccgaactgaactgtttgctaaatttaaaataactgaa 34821680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 8812426 - 8812483
Alignment:
Q  236 gaactatttgctaaatttaaaataactgaaccgaaccaaaatgtttgcattttgaact 293  Q
    |||||||||  |||||||||||||||||||  |||| ||| ||||||||||| |||||    
T  8812426 gaactatttattaaatttaaaataactgaattgaactaaactgtttgcatttcgaact 8812483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 490
Target Start/End: Original strand, 36928204 - 36928273
Alignment:
Q  422 tttcgaaccgaacccaactgtttcgaatcgaaccgaactattt-agttcagttccataattgttagtaat 490  Q
    |||| ||||||||| |||||||| |||  |||||||| ||||| |||||||||| | |||||||||||||    
T  36928204 tttcaaaccgaaccgaactgttttgaactgaaccgaattattttagttcagttctagaattgttagtaat 36928273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 60035 - 60104
Alignment:
Q  193 ggggtggacataattttgtttgggatgaaaactgaaccgaaccgaactatttgctaaatttaaaataact 262  Q
    |||||||||||  ||  ||| ||||||||||||||| ||||| ||||| |||| ||||||||||||||||    
T  60035 ggggtggacatggttcagttcgggatgaaaactgaatcgaactgaactgtttgttaaatttaaaataact 60104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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