View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_36 (Length: 352)
Name: NF18054_low_36
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 31056901 - 31056571
Alignment:
| Q |
17 |
aataggtccaccagaccaattgttgcctcctaaaataagatatgataggttggttaagtttcctatggatttaggaattgctccatttaatttacaaaag |
116 |
Q |
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| T |
31056901 |
aataggtccaccagaccaattgttgcctcctaaaataagatatgataggttggttaagtttcctatggatttaggaattgctccatttaatttacaaaag |
31056802 |
T |
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| Q |
117 |
gaaatatcaaggaattgtaaacctgttaatgtacacatttcttgggggatggaaccatcaaaataattatttttaaaagtcaaaatacttatgtttgaca |
216 |
Q |
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| T |
31056801 |
gaaatatcaaggaattgtaaacctgttaatgtacacatttcttgggggatggaaccatcaaaataattatttttaaaagtcaaaatacttatgtttgaca |
31056702 |
T |
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| Q |
217 |
tgttaccaatctgtgcggggatggttccataaaaggagttgttactgatgtctatgataaggaggttgggaaatgaagagaaggtgagagagtgaagtgt |
316 |
Q |
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| T |
31056701 |
agttaccaatctgtgcggggatggttccataaaaggagttgttacggatgtctatcataaggaggttgggaaatgaagagaaggtgagagagtgaagtgt |
31056602 |
T |
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| Q |
317 |
accttttaatcctaaatttgcaagacctatg |
347 |
Q |
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| T |
31056601 |
accttttaatcctaaatttgcaagacctatg |
31056571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 347
Target Start/End: Complemental strand, 31101329 - 31101006
Alignment:
| Q |
24 |
ccaccagaccaattgttgcctcctaaaataagatatgataggttggttaagtttcctatggatttaggaattgctccatttaatttacaaaaggaaatat |
123 |
Q |
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| T |
31101329 |
ccaccagaaaaattgttacctcctaaatctagatatgataggttggttaaatttcctatggatttatcaatttctccacttagtgtacaaaagaaaaaat |
31101230 |
T |
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| Q |
124 |
caaggaattgtaaacctgttaatgtacacatttcttgggggatggaaccatcaaaataattatttttaaaagtcaaaatacttatgtttgacatgttacc |
223 |
Q |
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| T |
31101229 |
caaggccttttaaactcctcaatgtgtacatttcttgagggatggaaccaataataggattttttgaaaaattcaatgtatttattcttgacaagttacc |
31101130 |
T |
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| Q |
224 |
aatctgtgcggggatggttccataaaaggagttgttactgatgtctatgataaggaggttgggaaatgaagagaaggtgagagagtgaagtgtacctttt |
323 |
Q |
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| T |
31101129 |
tatttgtggaggaatggttccataaaagtggttgttatagatatttagggttatgaggttggggaatgaagagaaggtgagagagtgaagtgtacctttt |
31101030 |
T |
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| Q |
324 |
aatcctaaatttgcaagacctatg |
347 |
Q |
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| T |
31101029 |
agtcctaaatttgcaagatctatg |
31101006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 340
Target Start/End: Complemental strand, 31138696 - 31138390
Alignment:
| Q |
34 |
aattgttgcctcctaaaataagatatgataggttggttaagtttcctatggatttaggaattgctccatttaatttacaaaaggaaatatcaaggaattg |
133 |
Q |
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||||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||| |
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| T |
31138696 |
aattgttgcctcctaaatctagatacaataggttggataaatttcctatggaattaggaattgctccacttagtttacaaaaggaaaaatcaatattttg |
31138597 |
T |
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| Q |
134 |
taaacctgttaatgtacacatttcttgggggatggaaccatcaaaataattatttttaaaagtcaaaatacttatgtttgacatgttaccaatctgtgcg |
233 |
Q |
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| T |
31138596 |
taaactttttaatgtgaacatttcttgagggatggaaccatcaataggatttagagaaaaattcaatgtatttatttttgagatgttaccaatttgtggg |
31138497 |
T |
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| Q |
234 |
gggatggttccataaaaggagttgttactgatgtctatgataaggaggttgggaaatgaagagaaggtgagagagtgaagtgtaccttttaatcctaaat |
333 |
Q |
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|| ||||||||||||||| |||| || |||| || | |||| || | |||||||| || ||||||||||||||||||||||||| ||| |||| |
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| T |
31138496 |
ggaatggttccataaaagtagttattgtaaatgtttagtgtttggagatttgagaatgaagaaaaagtgagagagtgaagtgtaccttttagtccaaaat |
31138397 |
T |
|
| Q |
334 |
ttgcaag |
340 |
Q |
| |
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|| |||| |
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| T |
31138396 |
tttcaag |
31138390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 31182411 - 31182268
Alignment:
| Q |
34 |
aattgttgcctcctaaaataagatatgataggttggttaagtttcctatggatttaggaattgctccatttaatttacaaaaggaaatatcaaggaattg |
133 |
Q |
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||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| | ||| ||||| ||| |
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| T |
31182411 |
aattgttgcctcctaaatctagatacaataggttggttaaatttcctatggaattaggaattgctccacttaatttacaatacaaaaaatcaatattttg |
31182312 |
T |
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| Q |
134 |
taaacctgttaatgtacacatttcttgggggatggaaccatcaa |
177 |
Q |
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| T |
31182311 |
taaactttttaaggtgaacatttcttgagggatggaaccatcaa |
31182268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 31182157 - 31182113
Alignment:
| Q |
288 |
aatgaagagaaggtgagagagtgaagtgtaccttttaatcctaaa |
332 |
Q |
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| T |
31182157 |
aatgaagaaaatgtgagagagtgaagtgtaccttttagtcctaaa |
31182113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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