View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_39 (Length: 349)
Name: NF18054_low_39
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 318
Target Start/End: Original strand, 51302407 - 51302724
Alignment:
| Q |
4 |
aatatgacggtggtttaggtataaactgtgttattccagtttatttttcttatagaannnnnnncctcagaaactaaa-tgaatctccattcaaacaaaa |
102 |
Q |
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| T |
51302407 |
aatatgacggtggtttaggtataaactgtgttattccagtttatttttcttatagaatttttttcctcaaaaactaaaatgaatctccatgcaaacaaaa |
51302506 |
T |
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| Q |
103 |
tatcaaatcatcaatactaaagaaaaatacattgcaatgattaaattttaataaataataatggtataattttttcctcaaacnnnnnnntaataacatt |
202 |
Q |
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| T |
51302507 |
aatcaaatcatcaatactaaagaaaaatacattgcaatgattaaattttaataaataataatggtataattttttcctcaaacaaaaaaataataacatt |
51302606 |
T |
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| Q |
203 |
ggtataatttttat--nnnnnnntcctttgatctccttccatatgattactgaatatatattaaaggaatttagcacaaaattttgttaaaataagactg |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51302607 |
ggtataatttttataaaaaaaaatcctttgatctccttccatatgattactgaatatatataaaaggaatttagcacaaaattttgttaaaataagactg |
51302706 |
T |
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| Q |
301 |
tttttaatacttccgatg |
318 |
Q |
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|||||||||||||||||| |
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| T |
51302707 |
tttttaatacttccgatg |
51302724 |
T |
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