View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_41 (Length: 344)
Name: NF18054_low_41
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_41 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 10784268 - 10784586
Alignment:
| Q |
15 |
aaattttgcacatgagtttctttgcaccaaatactagcatagctcaatattaaaaattggagatcccgctcaaatattaaatacggactcctgatataaa |
114 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10784268 |
aaattttgcacatgagtttctttgcaccaaata---gcatagctcaatattaaaaattggagatcccgctcaaatattatatacggactcctgatataaa |
10784364 |
T |
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| Q |
115 |
aatgtatttt---ttaaaaggaattatcatttatttaaacttcaaataacataaaattaaggttaggcaaacaatagtcatctttataaac-------ta |
204 |
Q |
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| T |
10784365 |
aatgtatttttttttaaaaggaattatcatttatttaaactgcaaataacataaaatcaaggttaggcttacaatagtcatctttataaactaagtaata |
10784464 |
T |
|
| Q |
205 |
agtaaaaagtaagtttgtatgggagtaactaactaatttttgttgagcttcattaaccacaataagtattctgatgtgttaaaaattgggtgcttaataa |
304 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
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| T |
10784465 |
agtaaaaagtaagtttgtatgggagtaactaactagtttttgttgagcttcattaaccactataattgttctgatgtgttaaaaattgggtgcttaataa |
10784564 |
T |
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| Q |
305 |
agagaaacaccaataactaaaa |
326 |
Q |
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| T |
10784565 |
agagaaacaccaataactaaaa |
10784586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 50507216 - 50506897
Alignment:
| Q |
15 |
aaattttgcacatgagtttctttgcaccaaatactagcatagctcaatattaaaaattggagatcccgctcaaatattaaatacggactcctgatataaa |
114 |
Q |
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| T |
50507216 |
aaattttgcacatgagtttctttgcaccaaata---gcatagttcaatattaaaaattggagatccaactcaaatattaaatacaaactcctaataaaaa |
50507120 |
T |
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| Q |
115 |
aa-tgtattttttaaaaggaattatcatttatttaaacttcaaataacataaaattaaggttaggcaaacaatagtcatctttataaactaagtaaa--- |
210 |
Q |
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| T |
50507119 |
aaatgtattttttaaaagaaaatatcatttatttaaaccgtaaataacataaacttaaggctaggctaacaatagtcatctttataaactaagtaaaagt |
50507020 |
T |
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| Q |
211 |
aagtaagtttgtatgggagtaactaactaatttttgttgagcttcattaaccacaataagtattctgatgtgttaaaaattgggtgcttaataaagagaa |
310 |
Q |
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| T |
50507019 |
aagtaa-tttgtacgggagtaactaactaatttttgttgagttccattaaccactataattgttctgatgtgttaaaaattaggcgcttaataaagag-a |
50506922 |
T |
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| Q |
311 |
acaccaataactaaaatatgatgat |
335 |
Q |
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| T |
50506921 |
acagcaataactaaaaaataatgat |
50506897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 12704673 - 12704733
Alignment:
| Q |
195 |
ttataaactaagtaaaaagtaagtttgtatgggagtaactaactaatttttgttgagcttca |
256 |
Q |
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| T |
12704673 |
ttataaattaagtaaaa-gtaagtttgtatggtaggaactaactaacttgtgttgagtttca |
12704733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 9206961 - 9206911
Alignment:
| Q |
214 |
taagtttgtatgggagtaactaactaatttttgttgagcttcattaaccac |
264 |
Q |
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| T |
9206961 |
taagtttgtatgggaggaactaactaacttgtgttgaacttcactaaccac |
9206911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 56220874 - 56220830
Alignment:
| Q |
195 |
ttataaactaagtaaaaagtaagtttgtatgggagtaactaactaa |
240 |
Q |
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| T |
56220874 |
ttataaattaagtaaaaa-taagtttgtatgggaggaactaactaa |
56220830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 8509446 - 8509495
Alignment:
| Q |
214 |
taagtttgtatgggagtaactaactaatttttgttgagcttcattaacca |
263 |
Q |
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| T |
8509446 |
taagtttgtatgggagaaactaactaacctgtgttgagcttcactaacca |
8509495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 44891 - 44927
Alignment:
| Q |
204 |
aagtaaaaagtaagtttgtatgggagtaactaactaa |
240 |
Q |
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| T |
44891 |
aagtaaaaagtaagtttgtatgggaagaactaactaa |
44927 |
T |
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