View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_43 (Length: 340)
Name: NF18054_low_43
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 1344671 - 1344355
Alignment:
| Q |
1 |
atgatcagaaacaaagtgattactaattatgaattttcaaattacatctagagaacttcaaaaatttgagtagttttaacattgagaaaccaaatagtaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1344671 |
atgatcagaaacaaagtgattactaattatgaattttcaaattacatctagaggacttcaaaaatttgattagttttaacattgagaaaccaaatagtaa |
1344572 |
T |
|
| Q |
101 |
cacactgacttcacaatcacaaggaaattgttgtatagttgaaatagtgatgaagcaattcataatttaaaaatgcttactctaccaaaacagatattgt |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1344571 |
cacactgacttcacaatcacaaggaaattgttgcatagttgaaatagtgatgaagcaattcaaaatttaaaaatgcttactctaccaaaacagatattgt |
1344472 |
T |
|
| Q |
201 |
agagcgatcggcataaaatgagattaccgattgagtagatagctcaagcactcatagaagtggaactttctaaaagatttacgtgattctataatatttg |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
1344471 |
agagcgatcggcataaaatgagattaccgattaagtagatagctcaagcactcatagaagtggaactttctaaaagatttacgtcattc--taatatttg |
1344374 |
T |
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| Q |
301 |
aaatcatgcaccgtgttca |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
1344373 |
aaatcatgcaccgtgttca |
1344355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 1354892 - 1355177
Alignment:
| Q |
1 |
atgatcagaaacaaagtgattactaattatgaattttcaaattacatctagagaacttcaaaaatttgagtagttttaacattgagaaaccaaatagtaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||||| | || ||||||| |||||| ||||||||| |
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| T |
1354892 |
atgatcagaaacaaagtaattactaattatgaattttcaaattacatctaaaaaacttcacaaatttgagca-ttctaacattaagaaactaaatagtaa |
1354990 |
T |
|
| Q |
101 |
cacactgacttcacaatcacaaggaaattgttgtatagttgaaatagtgatgaagcaattcataatttaaaaatgcttactctaccaaaacagatattgt |
200 |
Q |
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|||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1354991 |
cacattgacttcacaatcacaaggaaattcttgcatagttgaaatagtgatgaagcaattcaaaatttaaaaatgcttactctaccaaaacagatattgt |
1355090 |
T |
|
| Q |
201 |
agagcgatcggcataaaatgagattaccgattgagtagatagctcaagcactcatagaagtggaactttctaaaagatttacgtgat |
287 |
Q |
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|| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
1355091 |
gaagtgatcgacataaaacgagattatcgattgagtagatagctcaagcactcatagaaatggaactttctaaaagatttacatgat |
1355177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 1350977 - 1350880
Alignment:
| Q |
19 |
attactaattatgaattttcaaattacatctagagaacttcaaaaatttgagtagttttaacattgagaaaccaaatagtaacacactgacttcacaa |
116 |
Q |
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|
||||||||||||||||||||||||| ||| | | ||||| | ||| ||||| | |||||||||| |||||||||| ||||| |||| ||||||||| |
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| T |
1350977 |
attactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaatacaccaacttcacaa |
1350880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 1361499 - 1361403
Alignment:
| Q |
19 |
attactaattatgaattttcaaattacatctagagaacttcaaaaatttgagtagttttaacattgagaaaccaaatagtaacacactgacttcacaa |
116 |
Q |
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|||||||||||| |||||||||||| ||||| | ||||| | ||| ||||| | ||||||||||||| ||||||| ||||| |||| |||||||||| |
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| T |
1361499 |
attactaattataaattttcaaattttatctataaaacttgacaaacttgagcatttttaacattgagtaaccaaacagtaatacac-gacttcacaa |
1361403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 29051879 - 29052064
Alignment:
| Q |
1 |
atgatcagaaacaaagtgattactaattatgaattttcaaattacatctagagaacttcaaaaatttgagtagttttaacattgagaaaccaaatagtaa |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||| | || |||||||||||||||||||||||| |
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| T |
29051879 |
atgatcagaaacaaagtgactactaattatgaattttcaaattacatatagaaaacttcacaaatttgagcatttctaacattgagaaaccaaatagtaa |
29051978 |
T |
|
| Q |
101 |
cacactgacttcacaatcacaaggaaattgttgtatagttgaaatagtgatgaagcaattcataatttaaaaatgcttactctacc |
186 |
Q |
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|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29051979 |
cacactgacttcacaatcacaaagaaattgttgcatagttgaaatagtgatgaagcaattcaaaatttaaaaatgcttactctacc |
29052064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 13590742 - 13590644
Alignment:
| Q |
15 |
agtgattactaattatgaattttcaaattacatctagagaacttcaaaaatttgagtagttttaacattgagaaaccaaatagtaacacactgacttca |
113 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| | |||| | ||||||||| | ||||| || |||||||||||||||||||||||||| |||| |
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| T |
13590742 |
agtgatgactaatcatgaattttcaaattacatctataaaactatacaaatttgagcatttttaccactgagaaaccaaatagtaacacactgaattca |
13590644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 13590630 - 13590587
Alignment:
| Q |
137 |
agttgaaatagtgatgaagcaattcataatttaaaaatgcttac |
180 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
13590630 |
agttgaaatagtgatgaaacaattcaaaatttaaaaatgtttac |
13590587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 24618733 - 24618643
Alignment:
| Q |
1 |
atgatcagaaacaaagtgattactaattatgaattttcaaattacatctagagaacttcaaaaatttgagtagttttaacattgagaaacc |
91 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||||| ||||| ||||||||| | | |||||||||||||||| |
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| T |
24618733 |
atgatcagaaacaaagtgactactaattatgaattttctaattacctctagaaaactttgtaaatttgagaattattaacattgagaaacc |
24618643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 34265363 - 34265403
Alignment:
| Q |
135 |
atagttgaaatagtgatgaagcaattcataatttaaaaatg |
175 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||| |
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|
| T |
34265363 |
atagttgaaatagggatgaagcaattcaaaattttaaaatg |
34265403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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