View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_low_45 (Length: 333)

Name: NF18054_low_45
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_low_45
NF18054_low_45
[»] chr1 (16 HSPs)
chr1 (1-250)||(3429430-3429672)
chr1 (2-241)||(3425952-3426193)
chr1 (271-318)||(5694448-5694495)
chr1 (271-318)||(12072074-12072121)
chr1 (271-318)||(15227866-15227913)
chr1 (271-318)||(29657898-29657945)
chr1 (271-318)||(38162977-38163024)
chr1 (271-318)||(51065760-51065807)
chr1 (271-318)||(18043289-18043336)
chr1 (271-318)||(19010699-19010746)
chr1 (271-318)||(24178475-24178522)
chr1 (271-310)||(29210529-29210568)
chr1 (271-318)||(42770002-42770049)
chr1 (280-318)||(30657729-30657767)
chr1 (281-318)||(47532693-47532730)
chr1 (282-318)||(41730435-41730471)
[»] chr8 (11 HSPs)
chr8 (271-318)||(34228809-34228856)
chr8 (271-318)||(2805272-2805319)
chr8 (271-318)||(7304530-7304577)
chr8 (271-318)||(9063064-9063111)
chr8 (271-318)||(13643138-13643185)
chr8 (271-318)||(13743563-13743610)
chr8 (271-318)||(16394073-16394120)
chr8 (283-318)||(27988523-27988558)
chr8 (283-318)||(28045825-28045860)
chr8 (282-318)||(4537767-4537803)
chr8 (280-316)||(21595975-21596011)
[»] chr7 (10 HSPs)
chr7 (271-318)||(24438604-24438651)
chr7 (271-318)||(34606388-34606435)
chr7 (280-318)||(45045897-45045935)
chr7 (273-318)||(24798417-24798462)
chr7 (279-318)||(42044313-42044352)
chr7 (284-318)||(4628693-4628727)
chr7 (280-318)||(29993508-29993546)
chr7 (271-308)||(1737116-1737153)
chr7 (285-318)||(13064902-13064935)
chr7 (278-318)||(12218455-12218495)
[»] chr6 (9 HSPs)
chr6 (271-318)||(32929520-32929567)
chr6 (271-318)||(32985205-32985252)
chr6 (271-318)||(392223-392270)
chr6 (271-318)||(2581079-2581126)
chr6 (279-318)||(4215822-4215861)
chr6 (279-318)||(35044016-35044055)
chr6 (286-318)||(1391205-1391237)
chr6 (278-318)||(11115116-11115156)
chr6 (282-318)||(29451138-29451174)
[»] chr5 (4 HSPs)
chr5 (271-318)||(34650845-34650892)
chr5 (280-317)||(10955972-10956009)
chr5 (271-318)||(11957979-11958026)
chr5 (271-318)||(35132648-35132695)
[»] chr2 (15 HSPs)
chr2 (271-318)||(20553058-20553105)
chr2 (271-318)||(30486337-30486384)
chr2 (272-318)||(22068333-22068379)
chr2 (274-318)||(4381922-4381966)
chr2 (279-318)||(6580316-6580355)
chr2 (279-318)||(31438773-31438812)
chr2 (271-318)||(32360881-32360928)
chr2 (279-318)||(25782853-25782892)
chr2 (271-318)||(26387076-26387123)
chr2 (279-318)||(27856416-27856455)
chr2 (271-318)||(28601093-28601140)
chr2 (283-318)||(34442556-34442591)
chr2 (279-318)||(44588029-44588068)
chr2 (272-318)||(22887877-22887923)
chr2 (272-318)||(31390139-31390185)
[»] chr3 (14 HSPs)
chr3 (278-318)||(48725398-48725438)
chr3 (271-318)||(10617296-10617343)
chr3 (271-318)||(39074545-39074592)
chr3 (271-318)||(49893458-49893505)
chr3 (270-318)||(2505476-2505524)
chr3 (278-318)||(42548222-42548262)
chr3 (271-318)||(272347-272394)
chr3 (271-318)||(858716-858763)
chr3 (279-318)||(6842746-6842785)
chr3 (279-318)||(40362600-40362639)
chr3 (271-318)||(43786998-43787045)
chr3 (271-318)||(46352761-46352808)
chr3 (271-318)||(52520808-52520855)
chr3 (273-318)||(18014799-18014844)
[»] chr4 (9 HSPs)
chr4 (271-318)||(16820979-16821026)
chr4 (273-318)||(36395226-36395271)
chr4 (271-315)||(54054659-54054703)
chr4 (271-318)||(4268834-4268881)
chr4 (271-318)||(29591316-29591363)
chr4 (271-318)||(32217171-32217218)
chr4 (283-318)||(43202407-43202442)
chr4 (283-318)||(50619213-50619248)
chr4 (271-318)||(3783510-3783560)
[»] scaffold0190 (1 HSPs)
scaffold0190 (280-318)||(15023-15061)
[»] scaffold0050 (1 HSPs)
scaffold0050 (271-309)||(69361-69399)
[»] scaffold0014 (1 HSPs)
scaffold0014 (281-318)||(68312-68349)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 3429430 - 3429672
Alignment:
Q  1 taatagttgtgggggtgttgttggggtgtgtgtttagcattgtgttgggtatagtcctcattttgtcttctttgtttttgtacaatttgttttagaaaga 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429430 taatagttgcgggggtgttgttggggtgtgtgtttagcattgtggtgggtatagtcctcattttgtcttctttgtttttgtacaatttgttttagaaaga 3429529  T
Q  101 aaaaagaaactattttgttaggaagaggaagatttaggtgtagtagaagggaaaggaaagagggtgaaggatgtgagctttgaaagaagacatggggatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||    
T  3429530 aaaaagaaactattttgttaggaagaggaagatttaggtgtagtagaagggaaaggaaagagggtgaagtatgtgagct-------aagacatggggatg 3429622  T
Q  201 taggtatttataatggccaacatccatgcagaggaagattattaacttat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429623 taggtatttataatggccaacatccatgcagaggaagattattaacttat 3429672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 3425952 - 3426193
Alignment:
Q  2 aatagttgtgggggtgttgttggggtgtgtgtttagcattgtgttgggtatagtcctcattttgtcttcttt----gtttttgtacaatttgttttagaa 97  Q
    ||||||||| |||||| |||| |||||||||||||||| | || |||||||| |||||||||||||||||||    |||||||||| |||  |||||| |    
T  3425952 aatagttgttggggtgatgttagggtgtgtgtttagcaatttggtgggtatactcctcattttgtcttctttctttgtttttgtactattgattttagga 3426051  T
Q  98 agaaaaaagaaactattttgttaggaagaggaagatttaggtgtagtagaagggaaaggaaagagggtgaaggatgtgagctt-tgaaagaagacatggg 196  Q
    || |||||   || |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  3426052 aggaaaaa---acgatttagttaggaagagagagatttaggtgtagtagaagggaaaggaaagagggtgaagggtgtaagcttgggaaagaagacatggg 3426148  T
Q  197 gatgtaggtatttataatggccaacatccatgcagaggaagatta 241  Q
    || ||||||||||||||||||||||||||||| ||| ||||||||    
T  3426149 gaggtaggtatttataatggccaacatccatgaagaagaagatta 3426193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 5694495 - 5694448
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  5694495 ccggtgcccccggagcactggttaagcataccataaaagggaattatt 5694448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 12072074 - 12072121
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||||||    
T  12072074 ccggtgcccccggggcactggttaagcataccataaaaaggaattatt 12072121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 15227913 - 15227866
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||    
T  15227913 ccggtgcctccggggcactggttaagcataccataaaagggaattatt 15227866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 29657945 - 29657898
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  29657945 ccggtgcccccagggcactggttaagcataccataaaagggaattatt 29657898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 38163024 - 38162977
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  38163024 ccggtgcccccggggcacgggttaagcataccataaaagggaattatt 38162977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 51065760 - 51065807
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| || |||||||||||||||| ||||||||||||||||||||    
T  51065760 ccggtgcccctggggcactggttaagcataccataaaagggaattatt 51065807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 18043336 - 18043289
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||  ||||||||    
T  18043336 ccggtgcccccggggcactggttaagcataccataaaatagaattatt 18043289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 19010699 - 19010746
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||| ||| |||||||||||||| | ||||||||||||||||||||    
T  19010699 ccggtgttcctggggcactggttaatcataccataaaagggaattatt 19010746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 24178475 - 24178522
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| |||||||||| | |||||||    
T  24178475 ccggtgcccccggggcactggttaagcataccataaaatgaaattatt 24178522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 29210568 - 29210529
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagg 310  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  29210568 ccggtgcccccggggcactggttaagcataccataaaagg 29210529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 42770002 - 42770049
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||  ||||||||    
T  42770002 ccggtgcccccggggcactggttaagcataccataaaatagaattatt 42770049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 30657767 - 30657729
Alignment:
Q  280 ccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  30657767 ccggggtactggttaagcataccataaaagggaattatt 30657729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 47532693 - 47532730
Alignment:
Q  281 cggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  47532693 cggggcattggttaagcataccataaaagggaattatt 47532730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 41730471 - 41730435
Alignment:
Q  282 ggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  41730471 ggggcacttgttaagcataccataaaagggaattatt 41730435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 34228856 - 34228809
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  34228856 ccggtgcccccggggcactggttaagcataccataaaagggaattatt 34228809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 2805272 - 2805319
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||    
T  2805272 ccggtgcctccggggcactggttaagcataccataaaagggaattatt 2805319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 7304530 - 7304577
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||| ||||||||||||| ||||||||||| ||||||||    
T  7304530 ccggtgcccccggagcactggttaagcataccataaaagagaattatt 7304577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 9063064 - 9063111
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||| |||||||||||||||||| || || ||||||||||||||    
T  9063064 ccggtgcttccggggcactggttaagcatatcacaaaagggaattatt 9063111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 13643185 - 13643138
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||  ||||||||||||||| ||||||||||| ||||||||    
T  13643185 ccggtgctcctagggcactggttaagcataccataaaagagaattatt 13643138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 13743610 - 13743563
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||  ||||||||||||||| ||||||||||| ||||||||    
T  13743610 ccggtgctcctagggcactggttaagcataccataaaagagaattatt 13743563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 16394073 - 16394120
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||| ||||||||| ||||||||||| ||||||||    
T  16394073 ccggtgcccccggggcattggttaagcataccataaaagagaattatt 16394120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 27988523 - 27988558
Alignment:
Q  283 gggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||| ||||||||||||||||||||    
T  27988523 gggcactggttaagcataccataaaagggaattatt 27988558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 28045825 - 28045860
Alignment:
Q  283 gggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||| ||||||||||||||||||||    
T  28045825 gggcactggttaagcataccataaaagggaattatt 28045860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 4537767 - 4537803
Alignment:
Q  282 ggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  4537767 ggggcacaggttaagcataccataaaagggaattatt 4537803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 21596011 - 21595975
Alignment:
Q  280 ccggggcactggttaagcttaccataaaagggaatta 316  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  21596011 ccgggacactggttaagcataccataaaagggaatta 21595975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 24438651 - 24438604
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  24438651 ccggtgcccccggggcactggttaagcataccataaaagggaattatt 24438604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 34606435 - 34606388
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||||    
T  34606435 ccggtgctcccggggcacgggttaagcataccataaaaggtaattatt 34606388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 45045935 - 45045897
Alignment:
Q  280 ccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  45045935 ccggggcactggttaagcataccataaaagggaattatt 45045897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 24798417 - 24798462
Alignment:
Q  273 ggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  24798417 ggtgcccccggggcactggttaagcatactataaaagggaattatt 24798462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 42044313 - 42044352
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  42044313 cccggggcactggttaaacataccataaaagggaattatt 42044352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 4628727 - 4628693
Alignment:
Q  284 ggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||||||||| ||||||||||||||||||||    
T  4628727 ggcactggttaagcataccataaaagggaattatt 4628693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 29993508 - 29993546
Alignment:
Q  280 ccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  29993508 ccgggacactggttaagcataccataaaagggaattatt 29993546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 1737153 - 1737116
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaa 308  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  1737153 ccggtgcttccggggcactggttaagcataccataaaa 1737116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 13064902 - 13064935
Alignment:
Q  285 gcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||| ||||||||||||||||||||    
T  13064902 gcactggttaagcataccataaaagggaattatt 13064935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 12218455 - 12218495
Alignment:
Q  278 tcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||||||||||||| | ||||||||||| ||||||||    
T  12218455 tcccggggcactggttaaacataccataaaagagaattatt 12218495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 32929520 - 32929567
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  32929520 ccggtgcccccggggcactggttaagcataccataaaagggaattatt 32929567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 32985205 - 32985252
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  32985205 ccggtgcccccggggcactggttaagcataccataaaagggaattatt 32985252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 392270 - 392223
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  392270 ccggtgcccccggggcactggttaagcataccataaaagagaattatt 392223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 2581126 - 2581079
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  2581126 ccggtgctcccggggtattggttaagcataccataaaagggaattatt 2581079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 4215861 - 4215822
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  4215861 cccggggcactggttaagcataccataaaaggaaattatt 4215822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 35044055 - 35044016
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  35044055 cccggggcactggttaagcataccataaaagagaattatt 35044016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 1391205 - 1391237
Alignment:
Q  286 cactggttaagcttaccataaaagggaattatt 318  Q
    |||||||||||| ||||||||||||||||||||    
T  1391205 cactggttaagcataccataaaagggaattatt 1391237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 11115116 - 11115156
Alignment:
Q  278 tcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||||||||||||| | || |||||||||||||||||    
T  11115116 tcccggggcactggttaaacatatcataaaagggaattatt 11115156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 29451138 - 29451174
Alignment:
Q  282 ggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  29451138 ggggcacgggttaagcataccataaaagggaattatt 29451174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 34650845 - 34650892
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  34650845 ccggtgcccccggggcactggttaagcataccataaaagggaattatt 34650892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 10955972 - 10956009
Alignment:
Q  280 ccggggcactggttaagcttaccataaaagggaattat 317  Q
    |||||||||||||||||| |||||||||||||||||||    
T  10955972 ccggggcactggttaagcataccataaaagggaattat 10956009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 11957979 - 11958026
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| || |||||||||||||||| | ||||||||||||||||||    
T  11957979 ccggtgcccctggggcactggttaagcatgccataaaagggaattatt 11958026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 35132695 - 35132648
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||| ||||||||| ||||||||||| ||||||||    
T  35132695 ccggtgcccccggggcattggttaagcataccataaaagagaattatt 35132648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 20553105 - 20553058
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  20553105 ccggtgcccccggggcactggttaagcataccataaaagggaattatt 20553058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 30486384 - 30486337
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  30486384 ccggtgcccccggggcactggttaagcataccataaaagggaattatt 30486337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 22068333 - 22068379
Alignment:
Q  272 cggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  22068333 cggtgcccccggggcactggttaagcataccataaaagggaattatt 22068379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 4381966 - 4381922
Alignment:
Q  274 gtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||||||||||||||||||| |||||||||| |||||||||    
T  4381966 gtgctcccggggcactggttaagcataccataaaatggaattatt 4381922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 6580355 - 6580316
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  6580355 cccggggcactggttaagcataccataaaagggaattatt 6580316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 31438812 - 31438773
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  31438812 cccggggcactggttaagcataccataaaagggaattatt 31438773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 32360881 - 32360928
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  32360881 ccggtgcccccggggcattggttaagcataccataaaagggaattatt 32360928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 25782853 - 25782892
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  25782853 cccgggacactggttaagcataccataaaagggaattatt 25782892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 26387076 - 26387123
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| |||  |||||||||||||| ||||||||||||||||||||    
T  26387076 ccggtgcccccaaggcactggttaagcataccataaaagggaattatt 26387123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 27856416 - 27856455
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  27856416 cccggggcactggttaagcataccataaaaggaaattatt 27856455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 28601140 - 28601093
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||| | ||||||||||||| ||||||||||| ||||||||    
T  28601140 ccggtgctcccagtgcactggttaagcataccataaaagagaattatt 28601093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 34442556 - 34442591
Alignment:
Q  283 gggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34442556 gggcactggttaagcataccataaaagggaattatt 34442591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 44588068 - 44588029
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  44588068 cccggggcacttgttaagcataccataaaagggaattatt 44588029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 22887923 - 22887877
Alignment:
Q  272 cggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||| ||||| ||||||||||||| ||||||||||| ||||||||    
T  22887923 cggtgcccccggagcactggttaagcataccataaaagagaattatt 22887877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 31390185 - 31390139
Alignment:
Q  272 cggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||| ||||| |||| |||||||| ||||||||||||||||||||    
T  31390185 cggtgcccccggagcacgggttaagcataccataaaagggaattatt 31390139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 48725438 - 48725398
Alignment:
Q  278 tcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  48725438 tcccggggcactggttaagcataccataaaagggaattatt 48725398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 10617296 - 10617343
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  10617296 ccggtgcccccggggcacgggttaagcataccataaaagggaattatt 10617343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 39074592 - 39074545
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| || |||||||||||||||| ||||||||||||||||||||    
T  39074592 ccggtgcccctggggcactggttaagcataccataaaagggaattatt 39074545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 49893505 - 49893458
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  49893505 ccggtgcccccggggcactgattaagcataccataaaagggaattatt 49893458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 2505524 - 2505476
Alignment:
Q  270 cccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||| ||| ||||||||||||| | ||||||||||||||||||||    
T  2505524 cccggtgcccccagggcactggttaaacataccataaaagggaattatt 2505476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 42548262 - 42548222
Alignment:
Q  278 tcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  42548262 tcccggagcactggttaagcataccataaaagggaattatt 42548222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 272394 - 272347
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| |||||||||| | |||||| ||||||||||||||||||||    
T  272394 ccggtgcccccggggcaccgattaagcataccataaaagggaattatt 272347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 858763 - 858716
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| |||||||||| |||||||| |||||||||||| |||||||    
T  858763 ccggtgcccccggggcacgggttaagcataccataaaaggaaattatt 858716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 6842785 - 6842746
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  6842785 cccggggcactggttaagcataccataaatgggaattatt 6842746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 40362600 - 40362639
Alignment:
Q  279 cccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  40362600 cccggggcactggttaagcataccataaaagagaattatt 40362639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 43787045 - 43786998
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||  ||||||||    
T  43787045 ccggtgcccccggggcactggttaagcataccataaaatagaattatt 43786998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 46352808 - 46352761
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||  ||||||||| |||||||| ||||||||||||||||||||    
T  46352808 ccggtgcctccggggcacgggttaagcataccataaaagggaattatt 46352761  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 52520855 - 52520808
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| ||||||||||  ||||||||    
T  52520855 ccggtgcccccggggcactggttaagcataccataaaatagaattatt 52520808  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 18014844 - 18014799
Alignment:
Q  273 ggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||| |||||||||||| |||||| |||||||||||| |||||||    
T  18014844 ggtgcccccggggcactgattaagcataccataaaaggaaattatt 18014799  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 16821026 - 16820979
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  16821026 ccggtgcccccggggcactggttaagcataccataaaaggaaattatt 16820979  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 36395271 - 36395226
Alignment:
Q  273 ggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  36395271 ggtgcccccagggcactggttaagcataccataaaagggaattatt 36395226  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 54054703 - 54054659
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaatt 315  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||    
T  54054703 ccggtgcccccggggcactggttaagcataccataaaaggaaatt 54054659  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 4268834 - 4268881
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| | ||||||||||||||| | ||||||||||||||||||||    
T  4268834 ccggtgccctcggggcactggttaatcataccataaaagggaattatt 4268881  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 29591363 - 29591316
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||| ||||||||||| ||||||| |||||||||||| |||||||    
T  29591363 ccggtgcccccggggcactagttaagcataccataaaaggtaattatt 29591316  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 32217218 - 32217171
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||  ||||||||| |||||||| ||||||||||||||||||||    
T  32217218 ccggtgcctccggggcacaggttaagcataccataaaagggaattatt 32217171  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 43202407 - 43202442
Alignment:
Q  283 gggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||||||||||||| ||||||||    
T  43202407 gggcactggttaagcttaccataaaagagaattatt 43202442  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 318
Target Start/End: Complemental strand, 50619248 - 50619213
Alignment:
Q  283 gggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||||||||||||| ||||||||||||||||||||    
T  50619248 gggcactggttaagcataccataaaagggaattatt 50619213  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 3783510 - 3783560
Alignment:
Q  271 ccggtgctcccggggcactggt---taagcttaccataaaagggaattatt 318  Q
    ||||||||||||||||||| ||   ||||| ||||||||||||||||||||    
T  3783510 ccggtgctcccggggcactagtacttaagcataccataaaagggaattatt 3783560  T

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Target: scaffold0190 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 15061 - 15023
Alignment:
Q  280 ccggggcactggttaagcttaccataaaagggaattatt 318  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  15061 ccggggcactggttaagcataccataaaagggaattatt 15023  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 69399 - 69361
Alignment:
Q  271 ccggtgctcccggggcactggttaagcttaccataaaag 309  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  69399 ccggtgctcccgaggcactggttaagcataccataaaag 69361  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 68312 - 68349
Alignment:
Q  281 cggggcactggttaagcttaccataaaagggaattatt 318  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  68312 cggggtactggttaagcataccataaaagggaattatt 68349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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