View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_47 (Length: 323)
Name: NF18054_low_47
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39439234 - 39439000
Alignment:
| Q |
1 |
aacgaataccaaaacaatgtcggattaaatcccaagtctcaccaaaaacctcgcattccaaaaacaaa-tgattcaagctttcctcaaaacaagagtttt |
99 |
Q |
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| T |
39439234 |
aacgaataccaaaacaatgtcggattaaatcccaagtctcaccaaaaacctcgcattccaaaaacaaaatgattcaagctttcctcaaaacaagagtttt |
39439135 |
T |
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| Q |
100 |
ttgtgggagaacgattcttcaataatctccaagaaaaatttgacacctttagtgggataattttattccaaacaacatcacaatatacatcttgattatt |
199 |
Q |
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| T |
39439134 |
ttgtgggagaacgattcttcaataatctccaagaaaaatttgacacctttattgggatagttttattccaaacaacatcataatatacatcttgattatt |
39439035 |
T |
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| Q |
200 |
atgcttcaccgccgtcaacaaatgatacacaccat |
234 |
Q |
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| T |
39439034 |
atgcttcaccgccgtcaacaaatgatacacaccat |
39439000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 32021960 - 32021883
Alignment:
| Q |
4 |
gaataccaaaacaatgtcggattaaatcccaagtctcaccaaaaacctcgcattccaaaaacaaatgattcaagcttt |
81 |
Q |
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|||||||||| |||||| ||||||||||| | |||||||||||||||| ||||||| |||||||| |||| |||||| |
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| T |
32021960 |
gaataccaaaccaatgtgagattaaatccccattctcaccaaaaacctcacattccataaacaaattattccagcttt |
32021883 |
T |
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