View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_48 (Length: 323)
Name: NF18054_low_48
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 9266520 - 9266563
Alignment:
| Q |
18 |
tgtatctctcccattcatcctttcataagtttggtctaaaaaat |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9266520 |
tgtatctctcccattcatcctttcataagtttggtctaaaaaat |
9266563 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 22621809 - 22621878
Alignment:
| Q |
64 |
cactctgtaacaggattaactagaactaactaatgccatgaggcacaaatacaagttactactatttaca |
133 |
Q |
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|||| |||||| | |||||||||||||||||||| |||||||||||||||||||| | || ||||||||| |
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| T |
22621809 |
cactttgtaactgaattaactagaactaactaataccatgaggcacaaatacaagctgctgctatttaca |
22621878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 22917622 - 22917579
Alignment:
| Q |
18 |
tgtatctctcccattcatcctttcataagtttggtctaaaaaat |
61 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
22917622 |
tgtatctctccaattcatccttccataagtttggtctaaaaaat |
22917579 |
T |
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