View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_51 (Length: 316)
Name: NF18054_low_51
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 82 - 308
Target Start/End: Complemental strand, 42450157 - 42449939
Alignment:
| Q |
82 |
caattcatacagagtgttatgaagttcgaacatatatatacaagttaaaatcctaatattgaatcacatacctcgagcgaaaacaattaattatttattc |
181 |
Q |
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| T |
42450157 |
caattcatacagagtgtaatgaagttcgaacatatatatacaagttaaaatcctaatatcgaatcacatacctcgagcgaaaacaattcat--------c |
42450066 |
T |
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| Q |
182 |
ctttgatcggaagaaagcttttcttgtactttcctatgtgacaatcaaatttgtctcctttaacaccaagcttctcaatcatttgagtccttaaatcaac |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450065 |
ctttgatcggaagaaagcttttcttgtactttcctatgtgacaatcaaatttgtctcctttaacaccaagcttctcaatcatttgagtccttaaatcaac |
42449966 |
T |
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| Q |
282 |
ccagactagttctttatcacctttgct |
308 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42449965 |
ccagactagttctttatcacctttgct |
42449939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 160 - 289
Target Start/End: Complemental strand, 42262669 - 42262540
Alignment:
| Q |
160 |
gaaaacaattaattatttattcctttgatcggaagaaagcttttcttgtactttcctatgtgacaatcaaatttgtctcctttaacaccaagcttctcaa |
259 |
Q |
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|||||||| || |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||| |
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| T |
42262669 |
gaaaacaactacgtatttattccttcaatcggaagaaagcttttcttgtactttcctatatgacaacgaaatttgtctccttcaacaccaagctcttcaa |
42262570 |
T |
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| Q |
260 |
tcatttgagtccttaaatcaacccagacta |
289 |
Q |
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| T |
42262569 |
tcatctgagttttcaaatcaacccaaacta |
42262540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 39720788 - 39720845
Alignment:
| Q |
161 |
aaaacaattaattatttattcctttgatcggaagaaagcttttcttgtactttcctat |
218 |
Q |
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| T |
39720788 |
aaaaaaattaattattcattcctcctattggaagaaagctttttttgtactttcctat |
39720845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 16921189 - 16921116
Alignment:
| Q |
232 |
ttgtctcctttaacaccaagcttctcaatcatttgagtccttaaatcaacccagactagttctttatcaccttt |
305 |
Q |
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| T |
16921189 |
ttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttt |
16921116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 29124352 - 29124292
Alignment:
| Q |
239 |
ctttaacaccaagcttctcaatcatttgagtccttaaatcaacccagactagttctttatc |
299 |
Q |
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|||||| |||||||| |||||||||||| || || ||||||| ||| ||||||||||||| |
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| T |
29124352 |
ctttaaaaccaagctcctcaatcatttgggtactcaaatcaaaccaagctagttctttatc |
29124292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 29137486 - 29137426
Alignment:
| Q |
239 |
ctttaacaccaagcttctcaatcatttgagtccttaaatcaacccagactagttctttatc |
299 |
Q |
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|||||| |||||||| ||| |||||||| || |||||||||| ||| ||||||||||||| |
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| T |
29137486 |
ctttaaaaccaagctcctcgatcatttgggtacttaaatcaaaccaagctagttctttatc |
29137426 |
T |
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