View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_low_54 (Length: 303)
Name: NF18054_low_54
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_54 |
 | |
|
| [»] scaffold0006 (7 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0783 (1 HSPs) |
| | |
|
| [»] scaffold0460 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 13508557 - 13508275
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13508557 |
actcaagaactgggtcaatttgagatccttcatcacatatatgttgaagtttaggtaattcattcaacatcagtgttttgatttgtgtatgagtcttctc |
13508458 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13508457 |
acttatttgtcctttatcttgaaatatcttcttgaagcaactccactcaacatgtagattctcaagagtatgcacattttcaagaaaccaataaggaaat |
13508358 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||| |||||||||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
13508357 |
ctagcatcctcggtgttatagctagccaatccaagataggtcattttgcaaaagagggaacttgagttttgggtttgcaatat |
13508275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 19136372 - 19136654
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
19136372 |
actcaagaactggatcaatttgagatccttcatcacatatatgttgaagtttaggtaattcattcaacatcagtgttttgatttgcgtatgagtcttctc |
19136471 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19136472 |
acttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacatgtagtttctcaagagtatgcacattttcaagaaaccaataaggaaat |
19136571 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||| |||||||||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
19136572 |
ctagcatcttcggtgttatagccagccaatccaagataggtcattttgcaaaagagggaacttgagttttgggtttgcaatat |
19136654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 13612352 - 13612070
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13612352 |
actcaagaactgggtcaatttgagatccttcatcacatatatgttgaagtttaggtaattcattcaacatcagtgttttgatttgtgtatgagtcttctc |
13612253 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | | |||| ||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13612252 |
acttatttctcctttatcttggaatatcttcttgaagcaacaccactcaacacgtagtttctcaagagtatacacattttcaagaaaccaataaggaaat |
13612153 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| ||||||||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
13612152 |
ctagcatcttcggtgttatagctagccaatccaagatgggtcattttgcaaaagagggaacttgagttttgggtttgcaatat |
13612070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 13656587 - 13656317
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13656587 |
actcaagaactgggtcaatttgagatccttcatcacatatatgttgaagtttaggtaattcattcaacatcagtgttttgatttgtgtatgagtcttctc |
13656488 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656487 |
acttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacctgtagtttctcaagagtatgcacattttcaagaaaccaataaggaaat |
13656388 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttg |
288 |
Q |
| |
|
|||| ||||| |||||||||| | |||||||||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
13656387 |
gtagcctcttcagtgttatagcaagccaaaccaagaatggtcattttgctaaggagggcacttgagttttg |
13656317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 13652055 - 13651773
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
13652055 |
actcaagaactgggtcaatttgagatccttcatcacatatatattgaagtttaggtaattcattcaacatcagtgttttgatttgtgtacgagtcttctc |
13651956 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13651955 |
acttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacatgtagtttctcaagagtatgcacattttcaagaaaccaataaggaaat |
13651856 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|| || ||||| |||||||||||| ||| |||| | | ||||||||||||| ||||| ||||| |||||| |||| |||||| |
|
|
| T |
13651855 |
cttgcctcttcagtgttatagctagtcaagccaatagaagtcattttgctaaagagggcacttgagttttgagtttgcaatat |
13651773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 13686795 - 13686513
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| |||| |
|
|
| T |
13686795 |
actcaagaactgggtcaatttgagatccttcatcacatatatgttgaagtttaggtaattaataaaacataagtgttttgatttgtgtatgagtcatctc |
13686696 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | | |||| |||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13686695 |
acttatttatcctttatcttgaaatatcttcttgaagcaacaccactcaacaagtagattctcaagagtatacacattttcaagaaaccaataaggaaat |
13686596 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||| |||||||||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
13686595 |
ctagcatcatcggtgttatagctagccaatccaagataggtcattttgcaaaagagggaacttgagttttgggtttgcaatat |
13686513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 13544925 - 13544643
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| || ||| | ||| |||| |||||||||||||||||||| |
|
|
| T |
13544925 |
actcaagaactgggtcaatatgagatccttcctcacatatatgttgaagtttaggcaattcatgcaatatcagattttttatttgtgtatgagtcttctc |
13544826 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13544825 |
acatatttgtcctttatcttgaaatatcttcttgaagcaactccattcaacaagtagtgactcaagagtatgcacattttcaagaaaccaataaggaaat |
13544726 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||||| ||||||||||||| || |||| | |||||||||||| ||||| ||||| ||||||||||| |||||| |
|
|
| T |
13544725 |
gtagcatcttcagtgttatagctactaaagccaatccaaatcattttgctaaagagggcacttgagttttgggtttgcaatat |
13544643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 13671866 - 13671609
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| || ||| |||||||||||| |
|
|
| T |
13671866 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagtttaggtaagtgattcaatgtcaggctttttatatgtagatgagtcttctc |
13671767 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671766 |
acttatttctcctttatcttggaaaatcttcttgaattgactccccccaacatatagtgactcaagagtatgcacattttcaagaaaccaataaggaaat |
13671667 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggaggg |
275 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||| |||||||||||| || ||||| |
|
|
| T |
13671666 |
ctagcatcttcggtgttatagccagccaatccaagataggtcattttgcaaaagaggg |
13671609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 20488638 - 20488356
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||| |||||| | |||| |||| ||||||| |||||||||||| |
|
|
| T |
20488638 |
actcaagaactgggtcaatttggcatccttcctcacatatttgttgaagttcaggtaattcattcaatatcagttttttaatttgtgcatgagtcttctc |
20488539 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| | |||| ||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20488538 |
acttatttctcctctatcttgaaatatcttcttgaaggaactcatctcaacaattagtgactcgagagtatgcacattttcaagaaaccaataaggaaat |
20488439 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||||| ||| ||||| || ||| |||| ||| ||||||||| ||| ||||||||||| |||||| |||| |||||| |
|
|
| T |
20488438 |
gtagcatcttcactgtcatagccactcaagccaacaaacgtcattttggtaaagagggaacttgagttttgagtttgcaatat |
20488356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 15897918 - 15898200
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
15897918 |
actcaagaactgggtcaatttgggatccttcctcacatatatgttgaagtttaggtaattcattcaatgacagattttttatttgtgtatgagtcttctc |
15898017 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||| | | |||| ||||| ||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
15898018 |
acttatttctcctttatcttgaaatatctccttgaagtgactcacctcaacaattagtgactcaagagtatgcacatttccaagaaaccaatgaggaaat |
15898117 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
||||| |||| | ||||||||| ||| || | | |||||| | |||||| ||||| ||||| ||||||||||| |||||| |
|
|
| T |
15898118 |
ctagccccttcaatcttatagctagtcaagcctacacaggtcaatctgctaaagagggcacttgagttttgggtttgcaatat |
15898200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 20369757 - 20369536
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
20369757 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattcgttcaaattcagtgttttgatttgtgtatgagtcatctc |
20369658 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||| |||| | || || ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20369657 |
acttatttctcctttatcttggaaaatcttattgaagcgactccccccaatatatagtgactcaagagtatgcacattttcaagaaaccaataaggaaag |
20369558 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagc |
239 |
Q |
| |
|
|||||||| || |||| ||||| |
|
|
| T |
20369557 |
ctagcatcatcagtgtcatagc |
20369536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 33 - 299
Target Start/End: Complemental strand, 20478818 - 20478549
Alignment:
| Q |
33 |
caatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtc---ttctcacttatttctcc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
20478818 |
caatttgagatccttcctcacatatatgttgaagtttaggtaatttattcaatatcagtcttttgatatgtggatgagtcttcttctcacttatttctcc |
20478719 |
T |
|
| Q |
130 |
tttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaatctagcatcttcg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
20478718 |
tttatcttgaaatatcttcttgaagcaactccactcaacaactagtgactcaagagtatgcacattttcaagaaaccaataaggaaagctagcatcatca |
20478619 |
T |
|
| Q |
230 |
gtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaata |
299 |
Q |
| |
|
|||| ||||| | || |||| | |||||||||| || ||||| ||||| ||||||||||| ||||| |
|
|
| T |
20478618 |
gtgtcatagcaattaaagccaatccatgtcattttgcaaaagagggcacttgtgttttgggtttgcaata |
20478549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 13589070 - 13588849
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||||||||||||||||||| |||||||| | |||| | |||| ||||||| |||| |||||||||||| |
|
|
| T |
13589070 |
actcaagaattgggtcaatttgggatccttcctcacatatatgttgaagttcaggtaattcaatcaatatcagtcttttgatatgtggatgagtcttctc |
13588971 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13588970 |
agttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacaactagtgtctcaagagtatgcacattttcaagaaaccaataagaaaag |
13588871 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagc |
239 |
Q |
| |
|
|||||||| || |||| ||||| |
|
|
| T |
13588870 |
ctagcatcatcagtgtcatagc |
13588849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 93 - 293
Target Start/End: Complemental strand, 13422620 - 13422420
Alignment:
| Q |
93 |
ttttgatttgtgtatgagtcttctcacttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcac |
192 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
13422620 |
tttttatttgtgcatgagtcctctcacttatttctcctttatcttcgaatatcgtcttgaagcaactccactcaacatatagtgtctcaatagtatgcac |
13422521 |
T |
|
| Q |
193 |
attttcaagaaaccaataaggaaatctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggtt |
292 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||| ||||||||| || |||||||| || ||||||||| |||| ||||| ||||| ||||||||| |
|
|
| T |
13422520 |
attttcaagaaaccaatagggaaatcttggttcttcactgttatagcaactcaaaccaaaaatggtcatttttctaaagagggcacttgaattttgggtt |
13422421 |
T |
|
| Q |
293 |
t |
293 |
Q |
| |
|
| |
|
|
| T |
13422420 |
t |
13422420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 16495717 - 16495925
Alignment:
| Q |
20 |
tcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctcac |
119 |
Q |
| |
|
||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
16495717 |
tcaagaattgggtcaattggagatcctttctcacatatatgttgaagtttaggtaatttgttcaatgatagtgttttgatccgtgtatgagttttctcac |
16495816 |
T |
|
| Q |
120 |
ttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaatct |
219 |
Q |
| |
|
|||||| ||| | | |||||||||| |||||||| |||||| | |||| ||| ||||||||||||||||||||| |||| |||||||||||||| | |
|
|
| T |
16495817 |
ttatttgtccctcaccttgaaatattttcttgaaacaactccattcaacaactagactctcaagagtatgcacattttgaagataccaataaggaaatgt |
16495916 |
T |
|
| Q |
220 |
agcatcttc |
228 |
Q |
| |
|
||| ||||| |
|
|
| T |
16495917 |
agcctcttc |
16495925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 16466750 - 16466960
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||| ||||| ||||||||||||||||| | ||||||||| || |||||| | ||||||||| | ||| |
|
|
| T |
16466750 |
actcaagaactgggtcaattcgagatccctccttacataactgttgaagtttaggtaacttggtcaacaccaatgctttgatctttgtatgagtttcctc |
16466849 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||| | | | ||||||||||||||||||||| ||||| | |||| |||| |||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
16466850 |
gcttatttgttcctcatcttgaaatatcttcttgaaacaactacattcaacagatagtacctcaagagtacgcacattttgaagaaaccaataaggaaat |
16466949 |
T |
|
| Q |
218 |
ctagcatcttc |
228 |
Q |
| |
|
|||| ||||| |
|
|
| T |
16466950 |
gtagcctcttc |
16466960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 13515558 - 13515463
Alignment:
| Q |
205 |
ccaataaggaaatctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
13515558 |
ccaataaggaaatctagcatcctcggtgttatagctagccaatccaagataggtcattttgcaaaagagggaacttgagttttgggtttgcaatat |
13515463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 146348 - 146078
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
146348 |
actcaagaactgggtcaatttgagatccttcatcacatatatgttgaagtttaggtaattcattcaacatcagtgttttgatttgtgtatgagtcttctc |
146249 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
146248 |
acttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacatgtagtttctcaagagtatgcacattttcaagaaaccaataaggaaat |
146149 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttg |
288 |
Q |
| |
|
|||| ||||| |||||||||| | |||||||||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
146148 |
gtagcctcttcagtgttatagcaagccaaaccaagaatggtcattttgctaaggagggcacttgagttttg |
146078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 141816 - 141534
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
141816 |
actcaagaactgggtcaatttgagatccttcatcacatatatattgaagtttaggtaattcattcaacatcagtgttttgatttgtgtaagagtcttctc |
141717 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
141716 |
acttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacaagtagtaactcaagagtatgcacattttcaagaaaccaataaggaaat |
141617 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||| ||||| |||||||||||| ||| |||| | | ||||||||||||| ||||| ||||| |||||| |||| |||||| |
|
|
| T |
141616 |
atagcctcttcagtgttatagctagtcaagccaatagaagtcattttgctaaagagggcacttgagttttgagtttgcaatat |
141534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 111228 - 110946
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||| |
|
|
| T |
111228 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaatgacagtcttttgatatgtggatgagtcttctc |
111129 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
111128 |
agttatttctcctttatcttgaaatatcttcttgaagcaactccactaaacaactagtgactcaagagtatgcacattttcaagaaaccaataaggaaat |
111029 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|| || ||||| | | |||| || ||| |||| || ||||||||||||| ||||||||||| |||||| |||| |||||| |
|
|
| T |
111028 |
cttgcctcttcactctcatagtcactcaagccaataacagtcattttgctaaagagggaacttgagttttgagtttgcaatat |
110946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 58517 - 58235
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| || ||| | ||| |||| |||||||||||||||||||| |
|
|
| T |
58517 |
actcaagaactgggtcaatttgggatccttcctcacatatatgttgaagtttaggcaattcatgcaatatcagattttttatttgtgtatgagtcttctc |
58418 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58417 |
agttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacaactagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
58318 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||||| ||||||||||||| || | || | |||||||||||| ||||| ||||| ||||||||||| |||||| |
|
|
| T |
58317 |
gtagcatcttcagtgttatagctactaaagctaatccaaatcattttgctaaagagggcacttgagttttgggtttgcaatat |
58235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 169480 - 169223
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| || ||| |||||||||||| |
|
|
| T |
169480 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagtttaggtaagtgattcaatgtcaggctttttatatgtagatgagtcttctc |
169381 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
169380 |
acttatttctcctttatcttggaaaatcttcttgaattgactccccccaacatatagtgactcaagagtatgcacattttcaagaaaccaataaggaaat |
169281 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggaggg |
275 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||| |||||||||||| || ||||| |
|
|
| T |
169280 |
ctagcatcttcggtgttatagccagccaatccaagataggtcattttgcaaaagaggg |
169223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 219981 - 219840
Alignment:
| Q |
98 |
atttgtgtatgagtcttctcacttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacatttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||| | ||||| ||||| || ||||||||||||||||| |
|
|
| T |
219981 |
atttgtgtatgagtcttctcacttatttcacctttatcttggaaaatcttcttgaagagactctcctcaacatatagtgacttaagagtatgcacatttt |
219882 |
T |
|
| Q |
198 |
caagaaaccaataaggaaatctagcatcttcggtgttatagc |
239 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||| ||||| |
|
|
| T |
219881 |
caagaaaccaataaggaaagctagcatcatcagtgtcatagc |
219840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 220088 - 219990
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttct |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||| ||||||||||| |
|
|
| T |
220088 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaatatcagtcttttgatatgtggatgagtcttct |
219990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 20813155 - 20813437
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||| |
|
|
| T |
20813155 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaatgtcagtcttttgatatgtggatgagtcttctc |
20813254 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20813255 |
acttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacaactagtgactcaagagtatgcacattttcaagaaaccaataaggaaat |
20813354 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||| ||||| |||||||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20813355 |
gtagcctcttccgtgttatagcaagccaaaccaagaatggtcattttgctaaagagggaacttgggttttgggttttcaatat |
20813437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 20792615 - 20792897
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20792615 |
actcaagaactgggtcaatttgggatccttcctcacatatatgttgaagtttaggtaattcattcaacatcagtgttttgatttgtgtatgagtcttctc |
20792714 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20792715 |
acttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacaagtagtgactcaagagtatgcacattttcaagaaaccaataaggaaat |
20792814 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|| || ||||| || |||| || ||| |||| ||| |||||||| |||| ||||||| ||| ||||||||||| |||||| |
|
|
| T |
20792815 |
cttgcctcttcacagtcatagtcactcaagccaataaaagtcattttactaaagagggaatttgagttttgggtttgcaatat |
20792897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 22282803 - 22283088
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtctt--- |
114 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| |||||||| |||||||| |
|
|
| T |
22282803 |
actcaagaactgggtcaatttgggatccttcctcacatatatgttgaagtttaggtaattcattcaacatcaggttttttatttgtgtttgagtcttctt |
22282902 |
T |
|
| Q |
115 |
ctcacttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataagga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || | |||| || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22282903 |
ctcacttatttctcctttatcttgaaatatcttcttgaagcaactatcctcaacaactaatgactcaagagtatgcacattttcaagaaaccaataagga |
22283002 |
T |
|
| Q |
215 |
aatctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||||||||||| ||||||||||| || ||||||||||| ||||||| ||| |||||| |
|
|
| T |
22283003 |
aatctagcctcttcagtgttatagctagccaaaccaagaagggtcattttgcaaaagagggaacttgagttttggatttgcaatat |
22283088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 21815825 - 21815543
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||| |||| |||||||||||| |
|
|
| T |
21815825 |
actcaagaactgggtcaatttgggatccttcctcgcatatatgttgaagtttaggtaattcattcaatgtcagtcttttgatatgtggatgagtcttctc |
21815726 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21815725 |
agttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacaaatagtgactcaagagtatgcacattttcaagaaaccaataaggaaat |
21815626 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|| || ||||| |||||||||| | ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
21815625 |
cttgcctcttccgtgttatagcaagccaaaccaagactggtcattttgctaaagagggaacttgggttctgggttttcaatat |
21815543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 117076 - 116795
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
117076 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattcgctcaattccagtgttttgatttgtgtatgagtcttctc |
116977 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
116976 |
acttatttctcctttatcttgaaatatcttcttgaagcaactccactcaacaactagtgactcaagagtatgcacattttcaagaaaccaataaggaaag |
116877 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaata |
299 |
Q |
| |
|
|||||||| || |||| ||||| | || |||| | |||||||||| || ||||| ||||| ||||||||||| ||||| |
|
|
| T |
116876 |
ctagcatcatcagtgtcatagcaattaaagccaatccatgtcattttgcaaaagagggcacttgtgttttgggtttgcaata |
116795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 27821 - 27536
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttct- |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||| ||||||||||| |
|
|
| T |
27821 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaataacagacttttgatatgtggatgagtcttctt |
27722 |
T |
|
| Q |
117 |
--cacttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataagga |
214 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27721 |
ctcacttatttttcctttatcttggaatatcttcttgaagcaactccactcaacaaatagtgactcaagagtatgcacattttcaagaaaccaataagga |
27622 |
T |
|
| Q |
215 |
aatctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||| |||| | | |||||||||| || ||||| ||||| ||||||||||| |||||| |
|
|
| T |
27621 |
aatctagcctcttcaatgttatagctactcaagccaatacatgtcattttgcaaaagagggcacttgagttttgggtttgcaatat |
27536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 31936 - 31651
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttct- |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||| ||||||||||| |
|
|
| T |
31936 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaataacagacttttgatatgtggatgagtcttctt |
31837 |
T |
|
| Q |
117 |
--cacttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataagga |
214 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31836 |
ctcacttatttttcctttatcttggaatatcttcttgaagcaactccactcaacaaatagtgactcaagagtatgcacattttcaagaaaccaataagga |
31737 |
T |
|
| Q |
215 |
aatctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||| |||| | | |||||||||| || ||||| ||||| ||||||||||| |||||| |
|
|
| T |
31736 |
aatctagcctcttcaatgttatagctactcaagccaatacatgtcattttgcaaaagagggcacttgagttttgggtttgcaatat |
31651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 39517 - 39799
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |||| || ||| | ||| |||| |||||||||||||||||||| |
|
|
| T |
39517 |
actcaagaactgggtcaatatgagatccttcctcacatatatgttgaagtttgggcaattcatgcaatatcagcttttttatttgtgtatgagtcttctc |
39616 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39617 |
acatatttgtcctttatcttgaaatatcttcttgaagcaactcctttcaacaagtagtgactcaagagtatgcacattttcaagaaaccaataaggaaat |
39716 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||||| ||||||||||||| || |||| | |||||||||||| ||||| ||||| ||||||||||| |||||| |
|
|
| T |
39717 |
gtagcatcttcagtgttatagctactaaagccaatccaaatcattttgctaaagagggcacttgagttttgggtttgcaatat |
39799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0783 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0783
Description:
Target: scaffold0783; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 856 - 575
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
856 |
actcaagaactgggtcaatttgagatccttcctcacatatatgttgaagttttggtaattcgctcaaattcagtgctttgatttgtgtatgagtcttctc |
757 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| |||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
756 |
acttatttctcctttatcttggaaaatcttcttgaagcgactctcctcaacatctagtgactcaagagtatgcacattttcaagaaaccaataaggaaag |
657 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaata |
299 |
Q |
| |
|
|||||||| || |||| ||||| | || |||| | |||||||||| || ||||| ||||| ||||||||||| ||||| |
|
|
| T |
656 |
ctagcatcatcagtgtcatagcaattaaagccaatctatgtcattttgcaaaagagggcacttgtgttttgggtttgcaata |
575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 30703998 - 30704280
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
|||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||| |||| | |
|
|
| T |
30703998 |
actcaacaactgggtcaatttgggatccttcctcacatatatgttgaagtttaggtaatacattcaatgtcagtcttttgatttgtggatgaatcttttg |
30704097 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||| | |||| || || || ||||||||||||||||||||||||| || |||||||| |
|
|
| T |
30704098 |
ccttatttctcctttatcttggaatatcttcttgaaggaactcaactcaacaactaatgacttaagagtatgcacattttcaagaaactaacaaggaaat |
30704197 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| || |||||||||||||| || | ||||| ||||||||||| |||||| |
|
|
| T |
30704198 |
ctagcatcttcggtgtcatagctagccaaaccaacaatggtcattttgctaaagacagcacttgcgttttgggtttgcaatat |
30704280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 38056630 - 38056912
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||| |||||||||| |
|
|
| T |
38056630 |
actcaagaacttggtcaatttggaatccttcctcacatatatgttgaagttcaggtaatgcactcaatgtgagtgttttgatatgtgtgcgagtcttctc |
38056729 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38056730 |
acttatttctcctttatcgcagaatatcttcttgaagcaactccgctcaacaattagttcttcaagagtatgcacattttcaagaaaccaataaggaaag |
38056829 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
||||||||||| |||| |||||||| ||| |||| | | ||||||||||||| |||| ||||| ||||||||||| |||||| |
|
|
| T |
38056830 |
ctagcatcttcagtgtcatagctactcaagccaatacatgtcattttgctaaagaggacacttgagttttgggtttgcaatat |
38056912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0460
Description:
Target: scaffold0460; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 9627 - 9345
Alignment:
| Q |
18 |
actcaagaacttggtcaatttgagatccttcctcacatatatgttgaagtttaggtaattgattcaacaccagtgttttgatttgtgtatgagtcttctc |
117 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||| |||||| | |||| |||| ||||||| |||||||||||| |
|
|
| T |
9627 |
actcaagaactgggtcaatttggcatccttcctcacatatttgttgaagttcaggtaattcattcaatatcagtttttttatttgtgcatgagtcttctc |
9528 |
T |
|
| Q |
118 |
acttatttctcctttatcttgaaatatcttcttgaagcaactctcgtaaacatgtagtgtctcaagagtatgcacattttcaagaaaccaataaggaaat |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| | |||| ||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9527 |
acttatttctcctctatcttgaaatatcttcttgaaggaactcatctcaacaattagtgaatcgagagtatgcacattttcaagaaaccaataaggaaat |
9428 |
T |
|
| Q |
218 |
ctagcatcttcggtgttatagctacccaaaccaagaaaggtcattttgctaaggagggaacttgggttttgggttttcaatat |
300 |
Q |
| |
|
|||| ||||| ||| ||||| || ||| ||| ||| ||||||||| ||| ||||||||||| |||||| |||| |||||| |
|
|
| T |
9427 |
gtagcctcttcactgtcatagccactcaaggcaacaaacgtcattttggtaaagagggaacttgagttttgagtttgcaatat |
9345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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