View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_56 (Length: 284)
Name: NF18054_low_56
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 41738458 - 41738706
Alignment:
| Q |
17 |
tcctgtaagttatatactttatttacttatgattaagaatttaatacnnnnnnnnnnnnnnnnnnnttattgaatcaactaagcatagnnnnnnnnnnng |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41738458 |
tcctgtaagttatatactttatttacttatgattaagaatttaatacaaaaagaaaaaagcaaaaattattgaatcaactaagcatagtttttttttt-- |
41738555 |
T |
|
| Q |
117 |
aaggaactaagcatagcttaagaagtactgggatcggatcaatattgtctttacatcttatgtcaatactattcaaaacaactgatcgcctgcatcatca |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41738556 |
aaggaactgagcatagcttaagaagtactgggatcggatcaatattgtctttacatcttatgtcaatactattcaaaacaactgatcgcctgcatcatca |
41738655 |
T |
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| Q |
217 |
tacaattacatcataaacacagttttagttacatcatgaacacatcctagt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41738656 |
tacaattacatcataaacacagttttagttacatcatgaacacatcctagt |
41738706 |
T |
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