View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_57 (Length: 284)
Name: NF18054_low_57
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 274
Target Start/End: Complemental strand, 32571687 - 32571438
Alignment:
| Q |
24 |
tcatgtcattgtcttgactatgagaattataaactttcaattctaaagaacgggggtgtcagtagttgttggtgttttagaaaaagtttaagtactagtc |
123 |
Q |
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| T |
32571687 |
tcatgtcattttcttggctatgagaattataaactttcaattctaaagaacgggggtgtcaatagttgttggtgttttagaaaaagtttaagtactagtc |
32571588 |
T |
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| Q |
124 |
catgatgtcttgcatcatatattcctctttcaaatatacaccaaggccaataatgcaattaaaaagaaaaacatttataaatatacatatacatgcattg |
223 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32571587 |
catgatgtcttgcatcatatattcctctttaatatatacaccaaggccaataatgc-attaaaaagaaaaacatttataaatatacatatacttgcattg |
32571489 |
T |
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| Q |
224 |
gcaccagggaaaaaggtaaataattacctagggtaattagcatttcctttg |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32571488 |
gcaccagggaaaaaggtaaataattacctagggtaattagcatttcctttg |
32571438 |
T |
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