View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_low_6 (Length: 629)

Name: NF18054_low_6
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_low_6
NF18054_low_6
[»] chr4 (2 HSPs)
chr4 (12-343)||(54180011-54180342)
chr4 (373-613)||(54180372-54180612)
[»] chr3 (3 HSPs)
chr3 (40-343)||(1211060-1211366)
chr3 (380-613)||(1210784-1211023)
chr3 (78-145)||(38102604-38102671)
[»] chr5 (8 HSPs)
chr5 (18-343)||(41948307-41948635)
chr5 (40-343)||(41942793-41943099)
chr5 (34-209)||(22794935-22795110)
chr5 (448-613)||(22794534-22794699)
chr5 (380-613)||(41948031-41948270)
chr5 (243-343)||(22794822-22794922)
chr5 (402-613)||(41942517-41942734)
chr5 (401-445)||(22794720-22794764)
[»] chr7 (1 HSPs)
chr7 (96-169)||(39485527-39485600)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 54180011 - 54180342
Alignment:
Q  12 aggagcacagagtagttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaa 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180011 aggaacacagagtagttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaa 54180110  T
Q  112 tcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54180111 tcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaaacatccataacatgaacaggatcgccaca 54180210  T
Q  212 acgatctttggtataaccataatagcatccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacatta 311  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180211 acgatctttgttataaccataatagcatccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacatta 54180310  T
Q  312 ggccttggagcaccaacaaatgaaaacaaata 343  Q
    ||||||||||||||||||||||||||||||||    
T  54180311 ggccttggagcaccaacaaatgaaaacaaata 54180342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 373 - 613
Target Start/End: Original strand, 54180372 - 54180612
Alignment:
Q  373 gccacccaaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcataaccacatgattctattgataacatcga 472  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180372 gccacccaaaaatttgagcatcattagtaggatgaaaataagttggatatggaattgaaaattcattatcataaccacatgattctattgataacatcga 54180471  T
Q  473 catgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatg 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180472 catgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatg 54180571  T
Q  573 aaatgatccttaccatatactcttttccattgaggttgttg 613  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  54180572 aaatgatccttaccatatactcttttccattgaggttgttg 54180612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 40 - 343
Target Start/End: Complemental strand, 1211366 - 1211060
Alignment:
Q  40 taggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgta 139  Q
    ||||||||||||||| |||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||  |    
T  1211366 taggaaaatgccacaaatattgcttgtatgctgatagtggatgcaagaaaacaggaatacaacccgccaaaatcgaatcaaaaattgatcttctagtaaa 1211267  T
Q  140 agaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatct---ttggtataaccataatag 236  Q
    |||||||||||||||||||||||||||||| ||||||  ||||  ||||||||| ||||||||||||| |||||  | |   ||  || |||||| |||     
T  1211266 agaatcccccggcggttgtaaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgcgacaactttttttcttactagaaccatgataa 1211167  T
Q  237 catccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaa 336  Q
    ||||||||| |||| |||| ||| ||||||||||||||||||||||||| ||| ||||||||||||| |  || ||||||||||||||| ||||||| ||    
T  1211166 catccaacacgtttacaactcttagaagattcgcaatgttcgattaactgatttctaatagaagatggtgaatcaggccttggagcaccgacaaatgtaa 1211067  T
Q  337 acaaata 343  Q
    |||||||    
T  1211066 acaaata 1211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 380 - 613
Target Start/End: Complemental strand, 1211023 - 1210784
Alignment:
Q  380 aaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcat---aac---cacatgattctattgataacatcgac 473  Q
    |||||||| | |||||||  ||| |||||||||||||||||||||||||| ||||||||| ||||   |||    ||||||||||||| | || |  |||    
T  1211023 aaaaatttcatcatcatttgtagcatgaaaataagttggatatggaattggaaattcattgtcatataaacatttacatgattctattaacaaaaatgac 1210924  T
Q  474 atgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatga 573  Q
    ||||||||| |||| || || ||||| | ||||||||||||||  | || |  ||||| |  ||| | ||||||| |||  |||||||||||||||||||    
T  1210923 atgttacttacttctggcaagaacattagctttgttccccaattatgatctaaatcaccttctctccaaaaatcacaaccaattcttccaccaaccatga 1210824  T
Q  574 aatgatccttaccatatactcttttccattgaggttgttg 613  Q
    ||||||| |||||||  | ||||||||| |||| ||||||    
T  1210823 aatgatctttaccatgcaatcttttccactgagattgttg 1210784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 38102671 - 38102604
Alignment:
Q  78 ggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgtaagaatc 145  Q
    |||||||| || |||||||||||||| || ||||| ||||||||| ||||||| |||||||| |||||    
T  38102671 ggatgaaaaaacacaggaatacaaccagctaaaattgaatcaaaaattgatcttcttgtgtatgaatc 38102604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 41948635 - 41948307
Alignment:
Q  18 acagagtagttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaat 117  Q
    |||||||| || ||||  ||| ||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||    
T  41948635 acagagtaattagaaccgtttttaggaaaatgccacaaatattgcttgtatgctgatagtggatgaaagaaaacaggaatacaacccgccaaaattgaat 41948536  T
Q  118 caaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaac-gat 216  Q
    ||||| ||||||  || ||  |||||||||||  ||||||||||||||| || ||||||  ||||  ||||||||| ||||||||||||| |||||  ||    
T  41948535 caaaaattgatcatctagtaaaagaatcccccatcggttgtaaacaaaataccgaattctgaaaattatccataacttgaacaggatcgcgacaacttat 41948436  T
Q  217 ct--ttggtataaccataatagcatccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggc 314  Q
     |  ||  || |||||| ||| ||||||||| |||| |||| ||| |||||||||||||||| |||||||| ||| |||| |||||||| |  || ||||    
T  41948435 tttcttactagaaccatgataacatccaacacgtttacaactcttagaagattcgcaatgtttgattaactgatttctaacagaagatggtgaatcaggc 41948336  T
Q  315 cttggagcaccaacaaatgaaaacaaata 343  Q
    ||||||||||| ||||||| |||||||||    
T  41948335 cttggagcaccgacaaatgtaaacaaata 41948307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 40 - 343
Target Start/End: Complemental strand, 41943099 - 41942793
Alignment:
Q  40 taggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgta 139  Q
    ||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |||||||||||||||||  ||||||| || ||  |    
T  41943099 taggaaaatgccacaaatattgcttgtatgctgacagtggatgcaagaaaacaggaatacaacctgccaaaatcgaatcaaatattgatcttctagtaaa 41943000  T
Q  140 agaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatct---ttggtataaccataatag 236  Q
    |||||||||   |||||||||||||||||| ||||||  ||||  ||||||||| |||||||||||||  ||||  | |   ||  || |||||| |||     
T  41942999 agaatccccaaccggttgtaaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgcggcaactttttttcttactagaaccatgataa 41942900  T
Q  237 catccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaa 336  Q
    |||| ||||| |||||||| ||| |||||||| ||||||| |||||||||||| |||||||||||||||  |||||| ||||||||||| ||||||||||    
T  41942899 catcgaacaaatttgcaactcttagaagattcacaatgtttgattaactcatttctaatagaagatgttgaattaggtcttggagcaccgacaaatgaaa 41942800  T
Q  337 acaaata 343  Q
    |||||||    
T  41942799 acaaata 41942793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 22795110 - 22794935
Alignment:
Q  34 tatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctcct 133  Q
    ||||| ||||||||||||||| ||||||||| || | ||| | |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||    
T  22795110 tatttttaggaaaatgccacatatattgcttatacgctgaatgtggatgaaagaaaacaggaatacagccggccaaaatcgaatcaaaagttgatcttct 22795011  T
Q  134 tgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgcca 209  Q
     ||  ||||||| || || |||||||||||||||||||| |||  |||| |||||| ||||||||| |||||||||    
T  22795010 ggtaaaagaatcaccaggaggttgtaaacaaaaaactgatttctgaaaaacatccagaacatgaacgggatcgcca 22794935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 448 - 613
Target Start/End: Complemental strand, 22794699 - 22794534
Alignment:
Q  448 cacatgattctattgataacatcgacatgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatc 547  Q
    |||| |||||||||  ||| ||||  |||||||| |||||||| | |||||| | |||||||||||||||||||| || ||| |||| ||| ||||||||    
T  22794699 cacacgattctattagtaaaatcgtaatgttactagcttccggcagaaacattagctttgttccccaatcttcatctttatcgcttcctctcctaaaatc 22794600  T
Q  548 ataacttattcttccaccaaccatgaaatgatccttaccatatactcttttccattgaggttgttg 613  Q
    ||| |  | ||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||    
T  22794599 atatccaactcttccaccaaccatgaaatgatccttaccatacattcgtttccattgagattgttg 22794534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 380 - 613
Target Start/End: Complemental strand, 41948270 - 41948031
Alignment:
Q  380 aaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcat---aacc---acatgattctattgataacatcgac 473  Q
    |||||||| | |||||||  |||||||||||||||||||||||||||||| ||||||||| ||||   ||||   ||||||||||||| | || |  |||    
T  41948270 aaaaatttcatcatcatttgtaggatgaaaataagttggatatggaattggaaattcattgtcatataaacctttacatgattctattaacaaaaatgac 41948171  T
Q  474 atgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatga 573  Q
    ||||||||| |||| || || ||||| | ||||||||||||||  | || |  ||||| |  ||| ||||||||| |||  |||||||||||||||||||    
T  41948170 atgttacttacttctggcaagaacattagctttgttccccaattatgatctgaatcaccttctctcctaaaatcacaaccaattcttccaccaaccatga 41948071  T
Q  574 aatgatccttaccatatactcttttccattgaggttgttg 613  Q
    ||||||| |||||||  | ||||||||| |||| ||||||    
T  41948070 aatgatctttaccatgcaatcttttccactgagattgttg 41948031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 243 - 343
Target Start/End: Complemental strand, 22794922 - 22794822
Alignment:
Q  243 acaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaaacaaat 342  Q
    ||||||||||||| ||| |||||||  ||||| ||||||||||| || ||||| |||||||||| ||| |||||||||||||| ||||||||||||||||    
T  22794922 acaagtttgcaactcttagaagattgacaatgatcgattaactcgtttctaattgaagatgttaaatttggccttggagcaccgacaaatgaaaacaaat 22794823  T
Q  343 a 343  Q
    |    
T  22794822 a 22794822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 402 - 613
Target Start/End: Complemental strand, 41942734 - 41942517
Alignment:
Q  402 ggatgaaaataagttggatatggaattgaaaattcattatcat---aacc---acatgattctattgataacatcgacatgttacttgcttccggtaaaa 495  Q
    |||||||||||||||||||||||||||| ||||||||| ||||   ||||   ||| ||||||||| | || |  |||| |||||||  ||| || ||      
T  41942734 ggatgaaaataagttggatatggaattggaaattcattgtcatataaacctttacacgattctattaacaaaaatgacacgttacttaattctggcaagg 41942635  T
Q  496 acatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatgaaatgatccttaccatatactct 595  Q
    |||| | |||||||||  |||| ||||    ||| | |  ||| ||||||||| |||  |||||||||||||||||||||||||| |||||||  | |||    
T  41942634 acattagctttgttccaaaatcatcatccaaatctccttctctcctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgcaatct 41942535  T
Q  596 tttccattgaggttgttg 613  Q
    |||||| |||| ||||||    
T  41942534 tttccactgagattgttg 41942517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 445
Target Start/End: Complemental strand, 22794764 - 22794720
Alignment:
Q  401 aggatgaaaataagttggatatggaattgaaaattcattatcata 445  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||    
T  22794764 aggatgaaaataagttggatatggaattgcaaattcattctcata 22794720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 39485527 - 39485600
Alignment:
Q  96 atacaacccgccaaaatcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaac 169  Q
    |||||||| ||||| |||||||||||||  ||||| ||||| |||||||| ||| | ||||| | |||||||||    
T  39485527 atacaaccagccaacatcgaatcaaaagcagatcttcttgtataagaatcaccctgaggttgaagacaaaaaac 39485600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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