View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_low_61 (Length: 268)

Name: NF18054_low_61
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_low_61
NF18054_low_61
[»] chr4 (3 HSPs)
chr4 (157-240)||(54045339-54045423)
chr4 (174-227)||(2922066-2922118)
chr4 (174-227)||(2923316-2923368)
[»] chr2 (4 HSPs)
chr2 (156-227)||(25331844-25331914)
chr2 (175-227)||(25323674-25323725)
chr2 (158-219)||(7739201-7739262)
chr2 (158-219)||(36200871-36200932)
[»] chr1 (1 HSPs)
chr1 (174-227)||(34345263-34345315)
[»] chr5 (1 HSPs)
chr5 (156-227)||(18481254-18481324)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 54045339 - 54045423
Alignment:
Q  157 tgagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggca-ttttttattaataacaatgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  54045339 tgagtgcttatacgctgaccaccctaggtggcaataccactcccataccacctttgtgtggcatttttttattaataacaatgag 54045423  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 2922066 - 2922118
Alignment:
Q  174 accaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 227  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  2922066 accactctaggtggca-taccactcccataccacccttgtgtggcattttttat 2922118  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 2923368 - 2923316
Alignment:
Q  174 accaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 227  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  2923368 accactctaggtggca-taccactcccatgccacccttgtgtggcattttttat 2923316  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 25331914 - 25331844
Alignment:
Q  156 atgagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 227  Q
    |||||| ||||||| |  ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  25331914 atgagtacttatacacataccactctaggtggca-taccactcccataccacccttgtgtggcattttttat 25331844  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 25323674 - 25323725
Alignment:
Q  175 ccaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 227  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  25323674 ccactctaggtggca-taccactcccataccacccttgtgtggcattttttat 25323725  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 7739201 - 7739262
Alignment:
Q  158 gagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggca 219  Q
    |||| ||||||| || |||||| |||||||||||||||| |  |||||||||||||||||||    
T  7739201 gagtccttatacactaaccaccataggtggcaataccacccatataccacccttgtgtggca 7739262  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 36200932 - 36200871
Alignment:
Q  158 gagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggca 219  Q
    |||| ||||||| || |||||| ||||||||||| |||| |  |||||||||||||||||||    
T  36200932 gagtccttatacactaaccaccataggtggcaatcccacccatataccacccttgtgtggca 36200871  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 34345263 - 34345315
Alignment:
Q  174 accaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 227  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  34345263 accactctaggtggca-taccactcccataccacccttgtgtggcattttttat 34345315  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 18481254 - 18481324
Alignment:
Q  156 atgagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 227  Q
    |||||| ||||||| |  ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  18481254 atgagtacttatacacataccactctaggtggca-taccactcccataccatccttgtgtggcattttttat 18481324  T

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