View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_63 (Length: 253)
Name: NF18054_low_63
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 2945556 - 2945445
Alignment:
| Q |
137 |
atattaaatatgtcggctgattcaacatttacttggttgttccctctatggaaataccctccttcgtagccaagttaccctccaaaatggatactatgtg |
236 |
Q |
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| T |
2945556 |
atattatatacgtcggctgattcaacatttacttggttgttccctctatggaaataccctccttcgtagccaagttaccctccaaaatgga---tatgtg |
2945460 |
T |
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| Q |
237 |
atattggagaatatt |
251 |
Q |
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| T |
2945459 |
atgttggagaatatt |
2945445 |
T |
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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 2945941 - 2945878
Alignment:
| Q |
29 |
gttaattagaaattagaaatttctactatatacatattgattcgtgttctaaatcacagacgtg |
92 |
Q |
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|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2945941 |
gttagttaaaaatttgaaatttctactatatacatattgattcgtgttctaaatcaccgacgtg |
2945878 |
T |
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