View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18054_low_64 (Length: 251)
Name: NF18054_low_64
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_64 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 38984671 - 38984522
Alignment:
| Q |
83 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattcc |
182 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38984671 |
gagtttgaattccaattgtgattgtactattagcatgttgcaacctattattcttttacctgctgaagcccttttacacaggagcaaaagaagacattcc |
38984572 |
T |
|
| Q |
183 |
ctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
233 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
38984571 |
ct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaa |
38984522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 46 - 233
Target Start/End: Complemental strand, 10583134 - 10582949
Alignment:
| Q |
46 |
tacttggcgatgtctttgggaaactccttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgc |
145 |
Q |
| |
|
||||||| ||||||| |||||| |||||||| | |||||||||||| |||||||||||||||| |||| ||| |||| |||||| || |||| |||| |
|
|
| T |
10583134 |
tacttggtgatgtctatgggaacctcctttttagaatgagtttgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgc |
10583037 |
T |
|
| Q |
146 |
tgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
233 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||| || |||||| || |||||||| |
|
|
| T |
10583036 |
tgaaacccttttacacaggagcgaaggaagacattccctagacaactaaggttccaaaacttttggtttggaaatacccattttggaa |
10582949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 357020 - 356923
Alignment:
| Q |
136 |
tttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
233 |
Q |
| |
|
||||| || ||||||||||||||||||||||| || ||||||||||||| || |||||| |||| ||||||||||| || |||||| ||| ||||||| |
|
|
| T |
357020 |
ttttttcttctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaa |
356923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 6762518 - 6762618
Alignment:
| Q |
56 |
tgtctttgggaaactccttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaaccctt |
155 |
Q |
| |
|
||||||||| || |||||| | | || ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6762518 |
tgtctttggtaacctccttctgagaacgagttcaaattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaaccctt |
6762617 |
T |
|
| Q |
156 |
t |
156 |
Q |
| |
|
| |
|
|
| T |
6762618 |
t |
6762618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 16465650 - 16465554
Alignment:
| Q |
137 |
ttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
233 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||| |||||| || | |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
16465650 |
ttttcctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaa |
16465554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 50249155 - 50249220
Alignment:
| Q |
168 |
aaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
233 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
50249155 |
aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaa |
50249220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 50248348 - 50248405
Alignment:
| Q |
83 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattcttttt |
140 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
50248348 |
gagtttaaattccatttgtatttgtaccgttagattgttgcagcctatacttcttttt |
50248405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University