View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_66 (Length: 249)
Name: NF18054_low_66
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 43200071 - 43200304
Alignment:
| Q |
8 |
atacaggataagctgccctgaaaaggaatacaatggtcctctaccccaagggttgctaaaatatggtcctcctgagccacaagaatcgtttgaaggcctc |
107 |
Q |
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| T |
43200071 |
atacaggataagctgccctgaaaaggaatacaatggtcctctacccccagggttgctaaaatatggtcctcctgagccacaagaatcgtttgaaggcctc |
43200170 |
T |
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| Q |
108 |
agcgacgaagaaatctgtttgaagttaggaatgaagaagtccgatcttgaaaagaaacgcactgatggtcctatgtccccatggttggtagaagtgctca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43200171 |
agcgacgaagaaatctgtttgaagttaggaatgaagaagtctgatcttgaaaagaaacgcactgatggtcctatgtccccatggttggtagaagtgctca |
43200270 |
T |
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| Q |
208 |
aattaacatttgttcctactcaaccagaataatc |
241 |
Q |
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||||||||||||||||| ||||||||||| |||| |
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| T |
43200271 |
aattaacatttgttcctcctcaaccagaagaatc |
43200304 |
T |
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