View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_68 (Length: 246)
Name: NF18054_low_68
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_68 |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 37493212 - 37492984
Alignment:
| Q |
18 |
taaatgatattgatttggtgttgtatcatataaatatttctcactagtactagtttaggggggttttcacaagttcaaagttccctaaatgttttttggc |
117 |
Q |
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| T |
37493212 |
taaatgatattgatttggtgttgtatcatataaatatttctcactagtactagtttaggggggttttcgcaagttcaaagttccctaaatgttttttggc |
37493113 |
T |
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| Q |
118 |
tttatgttacttgggttatttgaaaggaacttaacgtatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatat |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37493112 |
tttatgttacttgggttatttgaaaggaacttaacatatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaacttcagtcatat |
37493013 |
T |
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| Q |
218 |
tggtggtttaagtcaaaatatgttttatt |
246 |
Q |
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|||||||||||||| |||||||||||||| |
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| T |
37493012 |
tggtggtttaagtcgaaatatgttttatt |
37492984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 41958351 - 41958510
Alignment:
| Q |
90 |
gttcaaagttccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaac----gtatttttcagaggaaggaggataacttacatg |
185 |
Q |
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||||||| |||||||||||| ||||| ||| |||| |||| ||||| |||||||| |||| ||||||||||||| |||||||| |||||||| | |
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| T |
41958351 |
gttcaaaactccctaaatgttatttggttttgtgttgcttgaattattcaaaaggaacgtaacaaacgtatttttcagagaaaggaggacaacttacagg |
41958450 |
T |
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| Q |
186 |
ctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatt |
246 |
Q |
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| T |
41958451 |
atctttgtgaaaggataaagctttagtcatattggtggtttaagt-aaaaaatgttttatt |
41958510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 38037442 - 38037590
Alignment:
| Q |
99 |
tccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaac----gtatttttcagaggaaggaggataacttacatgctctttgtg |
194 |
Q |
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| T |
38037442 |
tccctaaatgttatttggctttctgttgtttggactatttgaaaagagcgtaacagttgtatttttcagcaaaaggaggaaaacttgcaggtcctatgtg |
38037541 |
T |
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| Q |
195 |
aaagggtaaaactttagtcatattggtggtttaagtcaaaatatgtttt |
243 |
Q |
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| T |
38037542 |
aaaaggtgaagcttcagtcatattgatggtttaagtcgaaatatgtttt |
38037590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 246
Target Start/End: Original strand, 26133512 - 26133670
Alignment:
| Q |
92 |
tcaaagttccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaac----gtatttttcagaggaaggaggataacttacatgct |
187 |
Q |
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|||||| | ||||||| || ||||||| | |||| ||||| ||||||| ||||||| |||| |||||||||| |||||||||||||| ||||| ||| |
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| T |
26133512 |
tcaaagcttcctaaatattatttggctgtctgttgcttggattatttggaaggaacgtaacaaacgtatttttcaaaggaaggaggataatttacaggct |
26133611 |
T |
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| Q |
188 |
ctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatt |
246 |
Q |
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||||| |||||||||| ||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
26133612 |
ctttgcaaaagggtaaagcttcagtcgtattggtggtttaagtcgaaatatgttttatt |
26133670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 26689258 - 26689196
Alignment:
| Q |
185 |
gctctttgtgaaagggtaaaactttagtcatattggtggtttaagtc-aaaatatgttttatt |
246 |
Q |
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||||||||||||||||| || ||| || | ||||||||||||||||| ||||||||||||||| |
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| T |
26689258 |
gctctttgtgaaagggtgaagcttcagacttattggtggtttaagtcgaaaatatgttttatt |
26689196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 26958989 - 26958927
Alignment:
| Q |
185 |
gctctttgtgaaagggtaaaactttagtcatattggtggtttaagtc-aaaatatgttttatt |
246 |
Q |
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||||||||||||||||| || ||| || | ||||||||||||||||| ||||||||||||||| |
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| T |
26958989 |
gctctttgtgaaagggtgaagcttcagacttattggtggtttaagtcgaaaatatgttttatt |
26958927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 36268404 - 36268375
Alignment:
| Q |
217 |
ttggtggtttaagtcaaaatatgttttatt |
246 |
Q |
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| T |
36268404 |
ttggtggtttaagtcaaaatatgttttatt |
36268375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 6821072 - 6821164
Alignment:
| Q |
154 |
tatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatt |
246 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||| |||| ||||||||||| |||| |||||||||||||| |
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| T |
6821072 |
tattttttagaggaaggaggacaacttacatgctctttgtgaaaaggtgaaacttcagtcgtattggtggttcaagttgaaatatgttttatt |
6821164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 7129367 - 7129307
Alignment:
| Q |
185 |
gctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatt |
246 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
7129367 |
gctctttgtgaaagggtaaaacttt-gtcgtattggtggtttaagtcgaaatatgttttatt |
7129307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 2902742 - 2902709
Alignment:
| Q |
213 |
catattggtggtttaagtcaaaatatgttttatt |
246 |
Q |
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| T |
2902742 |
catattggtggtttaaatcaaaatatgttttatt |
2902709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 396473 - 396561
Alignment:
| Q |
154 |
tatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttt |
242 |
Q |
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||||||||||||||||||||| | || || ||||||| ||||||||| || ||| | |||||||| |||||||||||||||||||||| |
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| T |
396473 |
tatttttcagaggaaggaggaaactttgcaggctctttatgaaagggtgaagcttcaatcatattgatggtttaagtcaaaatatgttt |
396561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 1073301 - 1073361
Alignment:
| Q |
186 |
ctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatt |
246 |
Q |
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||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
1073301 |
ctctttgtgaaagggtatagcttcggtcatattggtggtttgagtcaaagtatgttttatt |
1073361 |
T |
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