View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_69 (Length: 245)
Name: NF18054_low_69
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31116584 - 31116339
Alignment:
| Q |
1 |
ttcatttcctatatacgattcgtgtagtattcttcctccataataagataactgctcttccctcaaaccatcaaatttgaaaatcaaactatatgaaccc |
100 |
Q |
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| T |
31116584 |
ttcatttcctatatacgattcgtgtagtattcttcctccataatcagataactgctcttccctcaaaccatcaaatttgaaaatcaaactatatgaaccc |
31116485 |
T |
|
| Q |
101 |
taaaattaaaaattaaaatcttctt------cttcaaacaccaattcccctttttcagtccaagatcagactacaaatcaaaatcatcaaattgaaagct |
194 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31116484 |
taaaattaaaaattaaaatcttcttcttcttcttcaaacaccaattcccctttttcagtccaagatcagactacaaatcaaaatcatcaaattgaaagct |
31116385 |
T |
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| Q |
195 |
ctcacttgcggcgtttggtgaagcgagggagtggacgtcatctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31116384 |
ctcacttgcggcgtttggtgaagcgagggagtggacgtcatctctg |
31116339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 31109400 - 31109630
Alignment:
| Q |
14 |
tacgattcgtgtagtattcttcctccataataagataactgctcttccc-tcaaaccatcaaatttgaaaatcaaactatatgaaccctaaaattaaaaa |
112 |
Q |
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| T |
31109400 |
tacgattcgtgtagtattcttggtttataatcagataactgctcttcccctcaaaccatcaaatttgaaaaccaaactatatgaaccctaaaattaaaaa |
31109499 |
T |
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| Q |
113 |
ttaaaatctt---cttcttcaaacaccaattcccctttttcagtccaagatcagactacaaatcaaaatcatcaaattgaaagctctcacttgcggcgtt |
209 |
Q |
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| T |
31109500 |
ttaaaatcttcttcttcttcaaacaccagttccctcttttcagtccaagatcaaactacaaatcaaaatcatcaaattgaaagctctcacttgcggcgtt |
31109599 |
T |
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| Q |
210 |
tggtgaagcgagggagtggacgtcatctctg |
240 |
Q |
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| T |
31109600 |
tggtgaagtgagggagtcgacgtcatctctg |
31109630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 16077715 - 16077917
Alignment:
| Q |
39 |
cataataagataactgctcttccc-tcaaaccatcaaatttgaaaatcaaactatatgaaccctaaaattaaaaattaaaatcttcttcttcaaacacca |
137 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16077715 |
cataatcagataactgctcttcccctcaaaccatcaaatttgaaaatcaaactatatgaaccctaaaattaaaaattaaaatcttcttcttcaaacacca |
16077814 |
T |
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| Q |
138 |
attcccctttttcagtccaagatcagactacaaatcaaaatcatcaaattgaaagctctcacttgcggcgtttggtgaagcgagggagtggacgtcatct |
237 |
Q |
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| T |
16077815 |
attcccctttttcagtccaagatcagaatacaaatcaaattcatcaaattgaaagctctcacttgcggcgtttggtgaagtgagggagtcgacgtcatct |
16077914 |
T |
|
| Q |
238 |
ctg |
240 |
Q |
| |
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||| |
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|
| T |
16077915 |
ctg |
16077917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 38406887 - 38406822
Alignment:
| Q |
92 |
tatgaaccctaaaattaaaaattaaaatcttcttcttcaaacaccaattcccctttttcagtccaa |
157 |
Q |
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||||||||||||| | ||||| ||| | |||||||||||||| ||||||| |||||||||||||| |
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| T |
38406887 |
tatgaaccctaaattaaaaaaaaaaagtattcttcttcaaacatcaattcctctttttcagtccaa |
38406822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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