View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_70 (Length: 242)
Name: NF18054_low_70
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 824707 - 824463
Alignment:
| Q |
1 |
ctatgaaacactaatacatcatatgacttgttaacacagatattggtaannnnnnnagagaaaacagaattatcaaatgtaatcacatgtcccaacgtat |
100 |
Q |
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| T |
824707 |
ctatgaaacactaatacatcatatgacttgttaacacagatattggtaatttttttagagaaaacagaattatcaaatgtaatcacatgtcccaacgtat |
824608 |
T |
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| Q |
101 |
taaacaccga-----------------aaaggtcttcgatatgaaaagttaattcaacatatatcgagataacatgcatactattcataatgtgttgggt |
183 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
824607 |
taaacaccgacatgtatgaaacaccgaaaaggtcttcgatatgaaaagttaattcaacatatatcgaggtaacatgcatactatttataatgtgttgggt |
824508 |
T |
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| Q |
184 |
acaatgtggatttatctatgcggagagacactgatgtagaaaatg |
228 |
Q |
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| T |
824507 |
acaatgtggatttatctatgcggagagacactgatgtagaaaatg |
824463 |
T |
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