View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_75 (Length: 239)
Name: NF18054_low_75
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 35049068 - 35048905
Alignment:
| Q |
1 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35049068 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggattt |
35048969 |
T |
|
| Q |
101 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagt |
164 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35048968 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagt |
35048905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 15635825 - 15635988
Alignment:
| Q |
1 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggattt |
100 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||||||||||||||||| ||| |
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| T |
15635825 |
atgattatgctcaagagtaacgtttgtaattgtaatttttccatctaaagacagacacatgtttactctagccatacattgtgctcttatggtagggttt |
15635924 |
T |
|
| Q |
101 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15635925 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagt |
15635988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 53325115 - 53325278
Alignment:
| Q |
1 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
53325115 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagactgacacatatttactctagctatacattgtgctcttatggtaggattt |
53325214 |
T |
|
| Q |
101 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagt |
164 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
53325215 |
ggtctcaaaaggttctttgagttactcacatagcttcttgcacaagtacatcctagagtaaagt |
53325278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 20007623 - 20007786
Alignment:
| Q |
1 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggattt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
20007623 |
atgactatgctcaagagcaacttttgtaattgcaattttttcatctaaagactgacacatatttactctagccatacattgtgctcttatgataggattt |
20007722 |
T |
|
| Q |
101 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagt |
164 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
20007723 |
ggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtacatcctagagtaaagt |
20007786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 54078254 - 54078415
Alignment:
| Q |
1 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggattt |
100 |
Q |
| |
|
||||||||||||||||||||| || | ||| | |||| |||||||| |||||| | | | ||||| |||||||||||| |||| | | ||| |||||||| |
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| T |
54078254 |
atgattatgctcaagagcaaccttagaaatagcaattgttccatctgaagacacacatacatttattctagccatacagtgtgttttcatgctaggattt |
54078353 |
T |
|
| Q |
101 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaa |
162 |
Q |
| |
|
|| || |||| || || || |||||| |||||||||||||||| |||| ||||||||||| |
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|
| T |
54078354 |
ggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctagagtaaa |
54078415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 14122743 - 14122580
Alignment:
| Q |
1 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggattt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
14122743 |
atgactatgctcaagagcaacttttgtaattgcaattttttcatctaaagactgacacatatttactctagccatacattgtgctcttatgataggattt |
14122644 |
T |
|
| Q |
101 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagt |
164 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
14122643 |
ggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtacatcctagagtaaagt |
14122580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 41698696 - 41698535
Alignment:
| Q |
1 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggattt |
100 |
Q |
| |
|
||||||||||||||||||||| || | ||| | |||| |||||||| |||||| | | | ||||| |||||||||||| |||| | | ||| |||||||| |
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|
| T |
41698696 |
atgattatgctcaagagcaaccttagaaatagcaattgttccatctgaagacacacatacatttattctagccatacagtgtgttttcatgctaggattt |
41698597 |
T |
|
| Q |
101 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaa |
162 |
Q |
| |
|
|| || |||| || || || |||||| |||||||||||||||| |||| ||||||||||| |
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|
| T |
41698596 |
ggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctagagtaaa |
41698535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 41704290 - 41704129
Alignment:
| Q |
1 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggattt |
100 |
Q |
| |
|
||||||||||||||||||||| || | ||| | |||| |||||||| |||||| | | | ||||| |||||||||||| |||| | | ||| |||||||| |
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|
| T |
41704290 |
atgattatgctcaagagcaaccttagaaatagcaattgttccatctgaagacacacatacatttattctagccatacagtgtgttttcatgctaggattt |
41704191 |
T |
|
| Q |
101 |
ggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaa |
162 |
Q |
| |
|
|| || |||| || || || |||||| |||||||||||||||| |||| ||||||||||| |
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|
| T |
41704190 |
ggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctagagtaaa |
41704129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 23556976 - 23556818
Alignment:
| Q |
4 |
attatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagccatacactgtgctcttatggtaggatttggt |
103 |
Q |
| |
|
|||||||||||||||||| || | ||| | |||| |||||||| |||||| | | | ||||| |||||||||||| |||| | | ||| |||||||||| |
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|
| T |
23556976 |
attatgctcaagagcaaccttagaaatagcaattgttccatctgaagacacacatacatttattctagccatacagtgtgttttcatgctaggatttggc |
23556877 |
T |
|
| Q |
104 |
ttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaa |
162 |
Q |
| |
|
|| |||| || || || |||||| |||||||||||||||| |||| ||||||||||| |
|
|
| T |
23556876 |
tttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctagagtaaa |
23556818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9284648 - 9284720
Alignment:
| Q |
1 |
atgattatgctcaagagcaacttttgtaattgtaatttttccatctaaagacatagacatatttactctagcc |
73 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||| ||| |||||| |||||| ||||||||||||||||| |
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|
| T |
9284648 |
atgattatgcttgagagcaactcttgaaattgtaatcgttctatctaatgacatatacatatttactctagcc |
9284720 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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