View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_80 (Length: 237)
Name: NF18054_low_80
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13025077 - 13025300
Alignment:
| Q |
1 |
ccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaatatgagcnnnnnnncctcccaaaaactgtcattcaaatccagctcg |
100 |
Q |
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| T |
13025077 |
ccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaatatgagctttttttcctcccaaaaactgtcattcaaatccagctcg |
13025176 |
T |
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| Q |
101 |
tgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatcaccacttcgaaattctaagggataataaaccttccgaatcaccttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13025177 |
tgcacatctctctcccaaaaaggatcatccttgtccggaaaataaacccaatcaccacttcgaaattctaagggataataaaccttccaaatcaccttaa |
13025276 |
T |
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| Q |
201 |
aatcatcactaacagagtcataac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
13025277 |
aatcatcactaacagagtcataac |
13025300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 18096456 - 18096233
Alignment:
| Q |
1 |
ccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaatatgagcnnnnnnncctcccaaaaactgtcattcaaatccagctcg |
100 |
Q |
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|||||||| || ||||||||||| |||||| | || || |||||||| |||| |||||| |||||||||||| |||||||| || || | | |
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| T |
18096456 |
ccaagaatcacgcttgaggctatacatctcccaaaatggttcatacaacttgacaatgagccccttctcctcccaaaaaccgtcattcatgtcaaggttg |
18096357 |
T |
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| Q |
101 |
tgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatcaccacttcgaaattctaagggataataaaccttccgaatcaccttaa |
200 |
Q |
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| T |
18096356 |
tgtacatcagtctcccaaaaagggtcatccttgttcggtaaacaaacccaatcatcaccttcaaattctaagggatatctaaccttccgaatcaccttaa |
18096257 |
T |
|
| Q |
201 |
aatcatcactaacagagtcataac |
224 |
Q |
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||||||| |||| ||||||||| |
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| T |
18096256 |
aatcatctgaaacacagtcataac |
18096233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 18081962 - 18081807
Alignment:
| Q |
69 |
cctcccaaaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatcaccacttcgaaattc |
168 |
Q |
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||||||||||| |||| |||| || || | ||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||| | |||||| |
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| T |
18081962 |
cctcccaaaaatcgtcaatcaagtcaaggtggtgtacatcaatctcccaaaaagggtcatccttgtccggcaaacaaacccaatcatcaccttcaaattc |
18081863 |
T |
|
| Q |
169 |
taagggataataaaccttccgaatcaccttaaaatcatcactaacagagtcataac |
224 |
Q |
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|||||||| |||||| |||||||||||| ||||||| ||||| | ||||||| |
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| T |
18081862 |
aaagggatacctaaccttacgaatcaccttataatcatctgtaacacaatcataac |
18081807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6117605 - 6117562
Alignment:
| Q |
1 |
ccaagaattacttttgaggctataaatctccgagaaagggtcat |
44 |
Q |
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|||||| ||||||||||||||||| |||||| |||||||||||| |
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| T |
6117605 |
ccaagagttacttttgaggctatatatctcccagaaagggtcat |
6117562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12712127 - 12712170
Alignment:
| Q |
1 |
ccaagaattacttttgaggctataaatctccgagaaagggtcat |
44 |
Q |
| |
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|||||| ||||||||||||||||| |||||| |||||||||||| |
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| T |
12712127 |
ccaagagttacttttgaggctatatatctcccagaaagggtcat |
12712170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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