View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18054_low_86 (Length: 230)

Name: NF18054_low_86
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18054_low_86
NF18054_low_86
[»] chr5 (5 HSPs)
chr5 (1-230)||(2998020-2998247)
chr5 (1-230)||(2998226-2998454)
chr5 (1-228)||(2997815-2998041)
chr5 (12-224)||(2998439-2998650)
chr5 (3-52)||(2997783-2997832)
[»] chr2 (8 HSPs)
chr2 (1-230)||(32716509-32716737)
chr2 (1-230)||(32717130-32717358)
chr2 (1-230)||(32716716-32716944)
chr2 (12-230)||(32717337-32717554)
chr2 (1-222)||(32716931-32717151)
chr2 (1-52)||(32714065-32714116)
chr2 (1-52)||(32716479-32716530)
chr2 (173-230)||(32714095-32714152)
[»] chr6 (5 HSPs)
chr6 (1-230)||(14904776-14905004)
chr6 (1-230)||(14904983-14905211)
chr6 (1-230)||(14905397-14905625)
chr6 (3-99)||(14905192-14905289)
chr6 (175-230)||(14904742-14904797)
[»] chr8 (6 HSPs)
chr8 (1-60)||(34916682-34916742)
chr8 (1-43)||(34534119-34534161)
chr8 (1-50)||(34544962-34545011)
chr8 (1-49)||(39848041-39848089)
chr8 (4-50)||(34549097-34549143)
chr8 (1-35)||(39848916-39848950)
[»] chr4 (1 HSPs)
chr4 (8-50)||(44474143-44474185)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2998247 - 2998020
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccctgccatggaaaagattgttctcaaagttaccaatgtagatatccccatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2998247 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccctgccatggaaaatattgttctcaaagttaccaatgtagatatccccatc 2998148  T
Q  101 agattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtcc 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||||||| |||||||||| |||||    
T  2998147 agattttttaagggtgccgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttttttat--ggatatattattcgtcctttccctgtcc 2998050  T
Q  201 gtcttccatcaacccaatcaccctcatata 230  Q
    ||||||||||||||||||||||||||||||    
T  2998049 gtcttccatcaacccaatcaccctcatata 2998020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2998454 - 2998226
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    |||| |||| ||||||  ||||||||||||||||||||  ||| |||||| | |||||||||||||| ||| || |||||||||| ||||||||||||||    
T  2998454 tcaaaccaaccacccttgtatattgttccatttgaccacatgtactttccgttgccatggaaaagatcgttatcgaagttaccaacgtagatatccccat 2998355  T
Q  100 cagattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtc 199  Q
    | |||||| | |||||||||| || || |||||||||  | |||||||||||||||||| |||||| ||||  |||||||| ||||||||||||| ||||    
T  2998354 cggattttgtcagggtgtcgtgactatgacgggaattcatggagaattcaccctcaaaacttgttcctgat--ggatatatgatccgtcctttccctgtc 2998257  T
Q  200 cgtcttccatcaacccaatcaccctcatata 230  Q
    | |  | ||||||||||||||||||||||||    
T  2998256 ctttgttcatcaacccaatcaccctcatata 2998226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2998041 - 2997815
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccc-tgccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||  || ||||||||||||||| ||| ||||||||    
T  2998041 tcaacccaatcaccctcatatattgttccacttgaccatgtgtactttcccttgccatggaaaagatcattttcaaagttaccaatgaagacatccccat 2997942  T
Q  100 cagattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtc 199  Q
      |||||| |||| ||| | | ||||| ||| ||||| ||  ||||||||||||||||| ||| ||||||   |||| ||| | | |||||||||  |||    
T  2997941 tggattttgtaagagtgccatgaccatgacgagaattcctaaagaattcaccctcaaaacttgctcttga--cggatttatgaccggtcctttcccagtc 2997844  T
Q  200 cgtcttccatcaacccaatcaccctcata 228  Q
    | | || ||| ||||||||||||||||||    
T  2997843 cttttttcattaacccaatcaccctcata 2997815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 2998650 - 2998439
Alignment:
Q  12 accctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccatcagatttttta 110  Q
    ||||||||||||||||| |||| | ||||||| |||||||| |||||| |||| ||  ||||| |||||||||| ||||||||||||||  |||||| ||    
T  2998650 accctcatatattgttctatttaaacatgtgtactttcccttgccatgaaaaatatcattctcgaagttaccaacgtagatatccccattggattttgta 2998551  T
Q  111 agggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtccgtcttccatc 210  Q
    |||||| ||  ||||| |||||| ||  | |||||||||||||||||||||| || ||||  | |||||| ||||| ||||||| ||||| |||||||||    
T  2998550 agggtgccgcgaccatgacgggagttcttggagaattcaccctcaaaaattgatcctgat--gaatatatgatccgacctttccctgtccttcttccatc 2998453  T
Q  211 aacccaatcaccct 224  Q
    || |||| ||||||    
T  2998452 aaaccaaccaccct 2998439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 2997832 - 2997783
Alignment:
Q  3 aacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct 52  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  2997832 aacccaatcaccctcatagattgttccacttgaccatgtgtactttccct 2997783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32716737 - 32716509
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    ||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||   |||| |||||||||| ||||||| ||||||    
T  32716737 tcaacccaatcaccctcatatattgttccatttaaccacgtgtactttcccttgccatggaaaagatcactctcgaagttaccaacgtagatacccccat 32716638  T
Q  100 cagattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtc 199  Q
    | ||||||||||| ||| ||  ||||| ||||||||| ||  |||||| |||||||||| ||| || ||||  |||||||| ||||| ||||||| ||||    
T  32716637 cggattttttaagagtgccgcgaccatgacgggaattcctaaagaattgaccctcaaaacttgctcctgat--ggatatatgatccgccctttccctgtc 32716540  T
Q  200 cgtcttccatcaacccaatcaccctcatata 230  Q
    | | |||||||||||||||||||||||||||    
T  32716539 ctttttccatcaacccaatcaccctcatata 32716509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32717358 - 32717130
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| |||||| | ||||||| ||||||   |||| |||||||||||||||||||||||||    
T  32717358 tcaacccaatcaccctcgtatattgttccatctaaccatgtgtactttcctttgccatggtaaagatcactctcgaagttaccaatgtagatatccccat 32717259  T
Q  100 cagattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtc 199  Q
    ||||||||||||||||| ||| ||||| ||||||||| |  |||||||||||||||||| ||| || ||||  |||||||| ||| | |||||||  |||    
T  32717258 cagattttttaagggtgccgtgaccatgacgggaattcccggagaattcaccctcaaaagttgatcctgat--ggatatatgatctgacctttcccagtc 32717161  T
Q  200 cgtcttccatcaacccaatcaccctcatata 230  Q
      |||||||||||||||||||||||| ||||    
T  32717160 attcttccatcaacccaatcaccctcgtata 32717130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32716944 - 32716716
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    |||||||||||||| || ||||||||||||| ||||||||||| |||||| | ||||||||||||||   |||| |||||||||| ||||||| ||||||    
T  32716944 tcaacccaatcaccatcgtatattgttccatgtgaccatgtgtactttcctttgccatggaaaagatcactctcgaagttaccaacgtagatacccccat 32716845  T
Q  100 cagattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtc 199  Q
    | ||||||||||| ||| ||| ||||| ||||||||| ||  |||||| |||||||||| ||| || ||||  |||||||| ||||| ||||||| ||||    
T  32716844 cggattttttaagagtgccgtgaccatgacgggaattcctaaagaattgaccctcaaaacttgctcctgat--ggatatatgatccgccctttccctgtc 32716747  T
Q  200 cgtcttccatcaacccaatcaccctcatata 230  Q
    | | |||||||||||||||||||||||||||    
T  32716746 ctttttccatcaacccaatcaccctcatata 32716716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 32717554 - 32717337
Alignment:
Q  12 accctcatatattgttccatttgaccatgtgtgctttccctgcca-tggaaaagattgttctcaaagttaccaatgtagatatccccatcagatttttta 110  Q
    ||||||||||||||||||| ||||||| || | |||||||||| | |||||||||||  ||||   |||| || ||||||  ||||| |  |||||| ||    
T  32717554 accctcatatattgttccaattgaccaagtttactttccctgcgaatggaaaagattactctcggtgttatcactgtagacttccccgtttgattttgta 32717455  T
Q  111 agggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtccgtcttccatc 210  Q
     | ||  ||| ||||| |  |||||| || |||||||||||||||||| ||| || ||||||  |||||||||||||||||||| ||||| |||||||||    
T  32717454 tgagttccgtgaccatgaaaggaattcctagagaattcaccctcaaaacttgctcctgatgg--atatattatccgtcctttccctgtccttcttccatc 32717357  T
Q  211 aacccaatcaccctcatata 230  Q
    ||||||||||||||| ||||    
T  32717356 aacccaatcaccctcgtata 32717337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32717151 - 32716931
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    ||||||||||||||||| ||||||  ||||| || |||||||| |||||||| ||||| ||||||||   |||  |||||||||||||||| || |||||    
T  32717151 tcaacccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccattgaaaagatcactcttgaagttaccaatgtagacatgcccat 32717052  T
Q  100 cagattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtc 199  Q
      ||| |  |||||||| | | ||||| ||||||||| ||  |||||| |||||||||| |||||| ||||   ||||||| ||  | ||||||| ||||    
T  32717051 tggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgaccctcaaaacttgttcctgat--agatatatcatttgccctttccctgtc 32716954  T
Q  200 cgtcttccatcaacccaatcacc 222  Q
    | |||||||||||||||||||||    
T  32716953 cttcttccatcaacccaatcacc 32716931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32714116 - 32714065
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct 52  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32714116 tcaacccaatcaccctcatatattgttccatttgaccatgtgtactttccct 32714065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32716530 - 32716479
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct 52  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32716530 tcaacccaatcaccctcatatattgttccatttgaccatgtgtactttccct 32716479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 32714152 - 32714095
Alignment:
Q  173 ggatatattatccgtcctttccatgtccgtcttccatcaacccaatcaccctcatata 230  Q
    |||||||| ||||| ||||||| ||||| | |||||||||||||||||||||||||||    
T  32714152 ggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatata 32714095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 14904776 - 14905004
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    |||||||||||||||||||||||| ||||||| ||||||||||  ||||| | ||||||||||||||  ||||  |||||||||||||||| |||||| |    
T  14904776 tcaacccaatcaccctcatatatttttccattcgaccatgtgtattttcctttgccatggaaaagatcattcttgaagttaccaatgtagacatccccgt 14904875  T
Q  100 cagattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtc 199  Q
      |||||| |||||||||||| ||||| ||| |||| | |  ||||||||||||||||| ||  || ||||  ||| |||| ||||| ||||||| ||||    
T  14904876 tggattttataagggtgtcgtgaccatgacgagaatctttaaagaattcaccctcaaaactttctcctgat--ggaaatatcatccgccctttccctgtc 14904973  T
Q  200 cgtcttccatcaacccaatcaccctcatata 230  Q
      | ||||||||||||| |||||||||||||    
T  14904974 ttttttccatcaacccagtcaccctcatata 14905004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 14904983 - 14905211
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    |||||||| |||||||||||||||  ||||  ||||||||||| |||||||| |||||||||||||   ||||||||||||||||| |||| |||||| |    
T  14904983 tcaacccagtcaccctcatatatttgtccacctgaccatgtgtactttcccttgccatggaaaagaccattctcaaagttaccaatatagagatccccgt 14905082  T
Q  100 cagattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtc 199  Q
      ||| || ||||||||||||  |||| || |   ||  | |||||| ||||||||||| ||| |  ||||  ||| | || || |||||||||| ||||    
T  14905083 tggatcttgtaagggtgtcgtgtccatgactgatgttcattgagaatccaccctcaaaacttgcttctgat--ggaaagatcattcgtcctttccctgtc 14905180  T
Q  200 cgtcttccatcaacccaatcaccctcatata 230  Q
    |  ||||||| ||||||||||||||||||||    
T  14905181 ctgcttccataaacccaatcaccctcatata 14905211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 14905397 - 14905625
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    |||||||| ||||||||||||||   ||||| ||||||||||| |||||||| ||||||||||  |    |||  |||||||||||||||| || ||| |    
T  14905397 tcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgt 14905496  T
Q  100 cagattttttaagggtgtcgtaaccattacgggaatttctcgagaattcaccctcaaaaattgttcttgatggggatatattatccgtcctttccatgtc 199  Q
      |||||| |||||||| | | ||||| ||||||||| ||  ||||||||||||||||| ||| || ||||  |||||||| ||||| |||||||  |||    
T  14905497 tggattttgtaagggtgccttgaccatgacgggaattcctaaagaattcaccctcaaaacttgctcctgat--ggatatatcatccgccctttcccagtc 14905594  T
Q  200 cgtcttccatcaacccaatcaccctcatata 230  Q
    | |  ||| |||||||| |||||||||||||    
T  14905595 ctttctccgtcaacccagtcaccctcatata 14905625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 14905192 - 14905289
Alignment:
Q  3 aacccaatcaccctcatatattgttccatttgaccatgtgtgctttccct-gccatggaaaagattgttctcaaagttaccaatgtagatatccccat 99  Q
    ||||||||||||||||||||||  ||| | ||||||||||  |||||||| ||||||||||||||| ||||| |||||||||| ||||| ||||||||    
T  14905192 aacccaatcaccctcatatatttctccctctgaccatgtgcactttcccttgccatggaaaagattattctcgaagttaccaacgtagacatccccat 14905289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 14904742 - 14904797
Alignment:
Q  175 atatattatccgtcctttccatgtccgtcttccatcaacccaatcaccctcatata 230  Q
    |||||| ||| ||| ||||| ||||| |||||||||||||||||||||||||||||    
T  14904742 atatatgatctgtcatttccctgtccttcttccatcaacccaatcaccctcatata 14904797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34916682 - 34916742
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccc-tgccatgga 60  Q
    |||||||| |||||||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  34916682 tcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttcccatgccatgga 34916742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34534119 - 34534161
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgt 43  Q
    ||||||||||| ||||||||||||||||||| |||||||||||    
T  34534119 tcaacccaatcgccctcatatattgttccatctgaccatgtgt 34534161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34544962 - 34545011
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttcc 50  Q
    |||||||| |||||||| |||||||||||||||| |||||||| ||||||    
T  34544962 tcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttcc 34545011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39848089 - 39848041
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttc 49  Q
    ||||||||||||||| ||||||||| ||||| ||||||||||| |||||    
T  39848089 tcaacccaatcacccacatatattgatccatctgaccatgtgtactttc 39848041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 34549097 - 34549143
Alignment:
Q  4 acccaatcaccctcatatattgttccatttgaccatgtgtgctttcc 50  Q
    ||||| ||| |||| ||||||||||||||||||||||||| ||||||    
T  34549097 acccattcatcctcgtatattgttccatttgaccatgtgtactttcc 34549143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39848950 - 39848916
Alignment:
Q  1 tcaacccaatcaccctcatatattgttccatttga 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  39848950 tcaacccaatcaccctcgtatattgttccatttga 39848916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 44474185 - 44474143
Alignment:
Q  8 aatcaccctcatatattgttccatttgaccatgtgtgctttcc 50  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||    
T  44474185 aatcaccctcatatattgatccatctgaccatgtgtactttcc 44474143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University