View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_88 (Length: 225)
Name: NF18054_low_88
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_88 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 9485959 - 9486178
Alignment:
| Q |
6 |
ataattcattgttattacatgcttcttgtacccaccatgatccaggggtgcaacttacactttcaaagaagccatttggtaaaggctatatcaagtggta |
105 |
Q |
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| T |
9485959 |
ataattcattgttattacatgcttcttgtacccaccatgatccaggggtgcaacttacactttcaaagaagccatttggtaaaggctatatcaagtggta |
9486058 |
T |
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| Q |
106 |
gtgaaattaattgatttggaggcggtgtttcaagtattgttatggtttatagtattgttacaagtagtagtgaaataatttatcttttgcattggaatct |
205 |
Q |
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| T |
9486059 |
gtgaaattaattgatttggaggcggtgtttcaagtattgttatggtttatagtattgttacaagtagtagtgaaataatctatcttttgcattggaatct |
9486158 |
T |
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| Q |
206 |
gttgtgttttctactatact |
225 |
Q |
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| T |
9486159 |
gttgtgttttctactatact |
9486178 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 48961588 - 48961658
Alignment:
| Q |
23 |
catgcttcttgtacccaccatgatccaggggtgcaacttacactttcaaagaagccatttggtaaaggcta |
93 |
Q |
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| T |
48961588 |
catgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagccatttggtgaaggcta |
48961658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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