View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_94 (Length: 207)
Name: NF18054_low_94
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_94 |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 25614845 - 25614660
Alignment:
| Q |
4 |
atggatcatcaaaattaaaccaagataactcacaaataaaatttatataatttctagtggtataaaataccaactttccagacaatnnnnnnnnctaaaa |
103 |
Q |
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| T |
25614845 |
atggatcatcaaaattaaaccaagacaactcacaaataaaatttatataatttctagtagtataaaataccaactttccagacaatagagaaaactaaaa |
25614746 |
T |
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| Q |
104 |
gtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccattatacttatc |
189 |
Q |
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| T |
25614745 |
gtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccattatacttatc |
25614660 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 31262838 - 31262760
Alignment:
| Q |
99 |
taaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacacc |
177 |
Q |
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| T |
31262838 |
taaaggtaaaagcatcgaaacagaatttttatcaatccacaattgcagtctaccctaaaattcattcatactaaacacc |
31262760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 1090 - 1169
Alignment:
| Q |
100 |
aaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccat |
179 |
Q |
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| T |
1090 |
aaaaataaaagcatccaaaccgaattgttatcaatccacaattgtagtccatcctagaatacatcaatactaaagaccat |
1169 |
T |
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