View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18054_low_96 (Length: 205)
Name: NF18054_low_96
Description: NF18054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18054_low_96 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 32750638 - 32750842
Alignment:
| Q |
1 |
tacatttacagttttgtttatattcaatcattaagagtaggttcaatatgaattttgattaaatttggatcaaatacatttacatttttgtttatattcc |
100 |
Q |
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| T |
32750638 |
tacatttacagttttgtttatattcagtcattaagagtaggttcaatatgaattttgattaaatttggatcaaatacatttacatttttgtttatattcc |
32750737 |
T |
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| Q |
101 |
atcataagaggaatattttaataaaaaacttgaaatagatnnnnnnnnnnnntcacattcaaccaccaataatgaattgattcagacggaaaataatttt |
200 |
Q |
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| T |
32750738 |
atcataagagtaatattttaataaaaaacttgaaatagataaaaaaaaaaaatcacattcaaccaccaataattaattgattcagacggtaaataatttt |
32750837 |
T |
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| Q |
201 |
cgatt |
205 |
Q |
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||||| |
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| T |
32750838 |
cgatt |
32750842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 32751186 - 32751262
Alignment:
| Q |
41 |
gttcaatatgaattttgattaaatttggatcaaatacatttacatttttgtttatattccatcataagaggaatatt |
117 |
Q |
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| T |
32751186 |
gttcaatatgcattttgaataaatttggactatatacatttacatttttatttatattccgtcatgagagtaatatt |
32751262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 32750603 - 32750662
Alignment:
| Q |
40 |
ggttcaatatgaattttgattaaatttggatcaaatacatttacatttttgtttatattc |
99 |
Q |
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| T |
32750603 |
ggttcaaaatgtatttggattatatctggaccaaatacatttacagttttgtttatattc |
32750662 |
T |
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