View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18055_high_11 (Length: 224)
Name: NF18055_high_11
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18055_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 41249822 - 41249615
Alignment:
| Q |
15 |
aaaccgaatatgaaattattacaaaatgttgaatatatgttgagcctttactttgaaacacatcaatgcaaattattaaaatctagtgttattgttatca |
114 |
Q |
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| T |
41249822 |
aaaccgaatatgaaattattacaaaatgttgaatatat--tgagcctttactttgaaacacatcaatgcaaattattaaaatctagtgttattgttatca |
41249725 |
T |
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| Q |
115 |
attgttaactagagcttttcacaatttaactaaagaatcatccatcttgcaaatttcagaattgaagacaacaatgaggagtcccaaaagggtgatagta |
214 |
Q |
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| T |
41249724 |
attgttaactagagcttttcacaatttaactaaagaatcatccatcttgcaaatttcagaattgaagacaacaatgaggagtcccaaaagggtgatagta |
41249625 |
T |
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| Q |
215 |
aaagctggca |
224 |
Q |
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|||||||||| |
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| T |
41249624 |
aaagctggca |
41249615 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 4234361 - 4234408
Alignment:
| Q |
157 |
catcttgcaaatttcagaattgaagacaacaatgaggagtcccaaaag |
204 |
Q |
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| T |
4234361 |
catcttgcaaatttcagagatgaagacaataatgaggagccccaaaag |
4234408 |
T |
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