View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18055_high_12 (Length: 222)
Name: NF18055_high_12
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18055_high_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 35467275 - 35467486
Alignment:
| Q |
11 |
cagagaaagagaaagagaatattgacaattgttttgattgccacatctgcttagattttgcacacgaaccagtagtaaccttatgtggccaccttttctg |
110 |
Q |
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| T |
35467275 |
cagagacagagaaagagaatattgacaattgttttgattgccacatctgcttagattttgcacacgaaccagtagtaaccttatgtggccaccttttctg |
35467374 |
T |
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| Q |
111 |
ttggtcttgcatctacaaatggctctttgtgcaaagggcttcacttgcacctgatgagcatccacagtgtccagtttgcaagcatgatatatctcacacc |
210 |
Q |
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| T |
35467375 |
ttggtcttgcatctacaaatggctctttgtgcaaagggcttcacttgcacctgatgagcatccacagtgtccagtttgcaagcatgatatatctcacacc |
35467474 |
T |
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| Q |
211 |
aaaatggtccct |
222 |
Q |
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| T |
35467475 |
aaaatggtccct |
35467486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 35473998 - 35474187
Alignment:
| Q |
33 |
tgacaattgttttgattgccacatctgcttagattttgcacacgaaccagtagtaaccttatgtggccaccttttctgttggtcttgcatctacaaatgg |
132 |
Q |
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| T |
35473998 |
tgacagttgttttgattgcaatatctgcttagactttgcacatgaaccagtagtcacactctgtggtcacctttactgctggtcctgtatttacaaatgg |
35474097 |
T |
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| Q |
133 |
ctctttgtgcaaagggcttcacttgcacctgatgagcatccacagtgtccagtttgcaagcatgatatatctcacaccaaaatggtccct |
222 |
Q |
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| T |
35474098 |
ctctttgtgcaaagtgcctctcttgcacctgatgagccaccacagtgtccagtttgcaaggatggcatatctcacaccaaaatggtccct |
35474187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 3663093 - 3662995
Alignment:
| Q |
36 |
caattgttttgattgccacatctgcttagattttgcacacgaaccagtagtaaccttatgtggccaccttttctgttggtcttgcatctacaaatggct |
134 |
Q |
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| T |
3663093 |
caatggttttgattgtaacatctgcttagacttcgccaacgaaccggtagtcaccctttgtggccacctttactgctggccttgcatctacaagtggct |
3662995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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