View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18055_high_6 (Length: 293)
Name: NF18055_high_6
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18055_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 28117073 - 28117337
Alignment:
| Q |
10 |
attattctcatctattagtactactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattgg |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28117073 |
attattatcatctattagtactactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattgg |
28117172 |
T |
|
| Q |
110 |
ctttgaaatagagaaaaactagcatgtctccttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28117173 |
ctttgaaatagagaaaaactagcatgtctccttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacc |
28117272 |
T |
|
| Q |
210 |
caaatttgccttggttgacccgagaataaaaagaaggattggcaattgttataaaagggtgcaca |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28117273 |
caaatttgccttggttgacccgagaataaaaagaaggattggcaattgttataaaagggtgcaca |
28117337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 22463648 - 22463912
Alignment:
| Q |
10 |
attattctcatctattagtactactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattgg |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22463648 |
attattatcatctattagtactactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattgg |
22463747 |
T |
|
| Q |
110 |
ctttgaaatagagaaaaactagcatgtctccttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22463748 |
ctttgaaatagagaaaaactagcatgtctccttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacc |
22463847 |
T |
|
| Q |
210 |
caaatttgccttggttgacccgagaataaaaagaaggattggcaattgttataaaagggtgcaca |
274 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
22463848 |
caaatttgccttggttgacccgagaattaaaagaaggattggcaattgttataaaagggagcaca |
22463912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 9314653 - 9314416
Alignment:
| Q |
31 |
tactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaatagagaaaaacta |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9314653 |
tactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaatagagaaaaacta |
9314554 |
T |
|
| Q |
131 |
gcatgtctccttacatat----atattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacccaaatttgccttggttg |
226 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9314553 |
gcatgtctccttacatatatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacccaaatttgccttggttg |
9314454 |
T |
|
| Q |
227 |
acccgagaataaaaagaaggattggcaattgttataaa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
9314453 |
acccgagaataaaaagaaggattggcaattgttataaa |
9314416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 23149039 - 23149281
Alignment:
| Q |
10 |
attattctcatctattagtactactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattgg |
109 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149039 |
attattatcatctattagtact---aatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattgg |
23149135 |
T |
|
| Q |
110 |
ctttgaaatagagaaaaactagcatgtctccttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacc |
209 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23149136 |
ctttgaagtagagaaaaactagcatgtctccttacatatatattcaagcaacgtgatacataagtgagaaaggagaaaataatggaatgggcctttgacc |
23149235 |
T |
|
| Q |
210 |
caaatttgccttggttgacccgagaataaaaagaaggattggcaat |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149236 |
caaatttgccttggttgacccgagaataaaaagaaggattggcaat |
23149281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 30719013 - 30719274
Alignment:
| Q |
10 |
attattctcatctattagtactactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattgg |
109 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719013 |
attattatcatctattagtact---aatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattgg |
30719109 |
T |
|
| Q |
110 |
ctttgaaatagagaaaaactagcatgtctccttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719110 |
ctttgaaatagagaaaaactagcatgtctccttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacc |
30719209 |
T |
|
| Q |
210 |
caaatttgccttggttgacccgagaataaaaagaaggattggcaattgttataaaagggtgcaca |
274 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |
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|
| T |
30719210 |
caaatttgtcttggttgacccgagaataaaaagaaggattgacaattgttataaaggggcgcaca |
30719274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 10385181 - 10385420
Alignment:
| Q |
25 |
tagtactactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaatagagaa |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10385181 |
tagtagtactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaatagagaa |
10385280 |
T |
|
| Q |
125 |
aaactagcatgtctccttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacccaaatttgccttggt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
10385281 |
aaactagcatgtctccttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatggaatgggcctttgacccaaatttgcctttgt |
10385380 |
T |
|
| Q |
225 |
tgacccgagaataaaaagaaggattggcaattgttataaa |
264 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
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| T |
10385381 |
tgacccgagaataaaaagaaggattgacaattgttataaa |
10385420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 41 - 264
Target Start/End: Original strand, 2452571 - 2452794
Alignment:
| Q |
41 |
ggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaatagagaaaaactagcatgtctcc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2452571 |
ggctaaatgaccaacaaaaagagccacaacgtggcacaccattgaagaaaagaaaatgtgtttcattggctttgaaatagagaaaaactagcatgtctcc |
2452670 |
T |
|
| Q |
141 |
ttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacccaaatttgccttggttgacccgagaataaaa |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2452671 |
ttacatatatattcaagcaacgtgatgcataagtgagaaaggagaaaataatggaatgggcctttgacccaaatttgccttggttgacccgagaataaaa |
2452770 |
T |
|
| Q |
241 |
agaaggattggcaattgttataaa |
264 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2452771 |
agaaggattggcaattgttataaa |
2452794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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