View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18055_high_8 (Length: 248)
Name: NF18055_high_8
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18055_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 41249427 - 41249649
Alignment:
| Q |
20 |
agaacttgggagcaggagctctgcctgtggaaaagaattgttagatggaaactctagcagcagatcctgatctgaactctcatcaacgaagtttaaagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41249427 |
agaacttgggagcaggagctctgcctgtggaaaggaattgttagatggaaactctagcagcagatcctgatccgaactctcatcaacgaagtttaaagaa |
41249526 |
T |
|
| Q |
120 |
tccagcatgggcaagccaccattgcgaggaaatgcaaataggcttttcggactgatgctagagccatctacggcttctttgccgccagtgccagctttta |
219 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41249527 |
tccagcatgtgcaagccaccattgcgaggaaatgcaaataggcttttcggactgatgctagagccatctacggcttctttgccgccagtgccagctttta |
41249626 |
T |
|
| Q |
220 |
ctatcacccctttgctactcctc |
242 |
Q |
| |
|
||||||||| |||| ||||||| |
|
|
| T |
41249627 |
ctatcacccttttgggactcctc |
41249649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 4234578 - 4234477
Alignment:
| Q |
25 |
ttgggagcaggagctctgcctgtggaaaagaattgttagatggaaactctagcagcagatcctgatctgaactctcatcaacgaagtttaaagaatccag |
124 |
Q |
| |
|
||||| |||| || |||||||||||||||||||| ||||| || | |||||||||||||| ||||| |||||||| ||||| ||||| |||||||| || |
|
|
| T |
4234578 |
ttgggtgcagaagttctgcctgtggaaaagaattattagaaggcacttctagcagcagatcttgatcagaactctcctcaacaaagttaaaagaatctag |
4234479 |
T |
|
| Q |
125 |
ca |
126 |
Q |
| |
|
|| |
|
|
| T |
4234478 |
ca |
4234477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University