View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18055_high_9 (Length: 240)

Name: NF18055_high_9
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18055_high_9
NF18055_high_9
[»] chr4 (4 HSPs)
chr4 (12-233)||(23062279-23062500)
chr4 (12-209)||(32880670-32880854)
chr4 (66-151)||(43992238-43992323)
chr4 (69-163)||(19318834-19318928)
[»] chr2 (1 HSPs)
chr2 (12-233)||(28592886-28593106)
[»] chr6 (2 HSPs)
chr6 (12-233)||(25907281-25907502)
chr6 (42-145)||(21695849-21695952)
[»] chr8 (2 HSPs)
chr8 (12-233)||(21279281-21279502)
chr8 (38-147)||(28164880-28164989)
[»] chr7 (4 HSPs)
chr7 (13-163)||(9817132-9817282)
chr7 (13-163)||(10719057-10719207)
chr7 (36-82)||(20483935-20483981)
chr7 (63-151)||(21115432-21115520)
[»] chr5 (3 HSPs)
chr5 (12-79)||(30302015-30302081)
chr5 (63-109)||(14779531-14779577)
chr5 (69-145)||(20584724-20584800)
[»] chr1 (2 HSPs)
chr1 (13-163)||(15229641-15229790)
chr1 (31-160)||(10505307-10505436)
[»] scaffold0985 (1 HSPs)
scaffold0985 (45-147)||(438-540)
[»] scaffold0114 (1 HSPs)
scaffold0114 (38-147)||(26706-26815)
[»] chr3 (1 HSPs)
chr3 (39-145)||(34932178-34932284)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 23062279 - 23062500
Alignment:
12 tcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062279 tcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtg 23062378  T
112 tctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgcagccccttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
23062379 tctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgcagccccttg 23062478  T
212 actccgacattggttcatgtca 233  Q
    |||| ||||  |||||| ||||    
23062479 actctgacaacggttcaagtca 23062500  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 32880854 - 32880670
Alignment:
12 tcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtg 111  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
32880854 tcattattatccaaaacattaatgcggtttaccttctttcttgacgtggttgaagcatgaaaatatttggtattcaagtcaccatcatgataccagtgtg 32880755  T
112 tctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgcagcccct 209  Q
    ||||||||||||||| || |||||||||||||||||||||||||             ||||||||||||||||||||||||||| |||||||||||||    
32880754 tctttgctcgctgtcacccatacttatcctcttgaatcatcaaa-------------tgcgcaagtttgtcaacaaactaggataagccgcagcccct 32880670  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 43992238 - 43992323
Alignment:
66 gcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcat 151  Q
    ||||||||||| || ||||| || ||||||||||||||||| || || |||||||  |||| ||||||||||||||||||||||||    
43992238 gcatgaaaaaaatttgtatttaaatcaccatcacgataccaatgagtttttgctctttgtctccaatacttatcctcttgaatcat 43992323  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 19318834 - 19318928
Alignment:
69 tgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 163  Q
    ||||||||||| || || |  ||||||||||| ||||||||  | ||||| || ||||||||||| ||||||||||| |||||||| || |||||    
19318834 tgaaaaaatttcgtgtttagatcaccatcacggtaccagtgaatttttgcacgttgtcgccaatatttatcctcttgtatcatcaactgagtcat 19318928  T

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Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 28592886 - 28593106
Alignment:
12 tcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtg 111  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28592886 tcatcattatccaaaaaattaatgcggtttatcttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtg 28592985  T
112 tctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgcagccccttt 211  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
28592986 tctttgctcgttgtcgccaatacttatcctcttgaat-atcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgcagccccttg 28593084  T
212 actccgacattggttcatgtca 233  Q
    |||||||||  |||||| ||||    
28593085 actccgacaacggttcaagtca 28593106  T

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Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 25907281 - 25907502
Alignment:
12 tcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
25907281 tcatcattatccaaaaaattaatgcggtttaccttctttcttgacatggctgaagcatgaagaaatttggtattcaagtcaccatcacgatacaagtgtg 25907380  T
112 tctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgcagccccttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      
25907381 tctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgcaacccctcg 25907480  T
212 actccgacattggttcatgtca 233  Q
    |||||||||  |||||| ||||    
25907481 actccgacaacggttcaagtca 25907502  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 21695952 - 21695849
Alignment:
42 accttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcct 141  Q
    |||||||||||||| || ||||  |||||||| ||| | |||||||| || ||||||||||||||||| || || ||||  |||| ||| ||| ||||||    
21695952 accttctttcttgaagttgctgccgcatgaaagaatctcgtattcaaatctccatcacgataccagtgagttttggctctttgtcaccagtacatatcct 21695853  T
142 cttg 145  Q
    ||||    
21695852 cttg 21695849  T

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Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 21279281 - 21279502
Alignment:
12 tcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtg 111  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||||   ||| ||||||| |||||||||||||||||| ||||    
21279281 tcatcattatccagaaaattaatgtggtttaccttctttcttgatgtggctgatgcatgaaatttttttgtattcacgtcaccatcacgataccaatgtg 21279380  T
112 tctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgcagccccttt 211  Q
    |||| ||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||||||||||| |||||||||||| ||||||||||||     
21279381 tcttagctcgttgccgccaatagttatcttcttgaatcatcaattgcgtcatgcgtttccgcaagtttgtcaaaaaactaggatcaaccgcagccccttg 21279480  T
212 actccgacattggttcatgtca 233  Q
    |||||||||  |||||| ||||    
21279481 actccgacaacggttcaagtca 21279502  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 28164880 - 28164989
Alignment:
38 gtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatactta 137  Q
    |||||| |||||||| || || || |||||||| || | |||||| || | ||| |||||||||||||||||||| || |||| ||||| ||||||| ||    
28164880 gtttactttctttctggaggttgcggaagcatggaagattttggtgtttaggtctccatcacgataccagtgtgttttagctctctgtctccaatacata 28164979  T
138 tcctcttgaa 147  Q
    ||||||||||    
28164980 tcctcttgaa 28164989  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 9817132 - 9817282
Alignment:
13 catcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgt 112  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||  ||| || || | ||||||||||||||||||||| ||    
9817132 catcattttccaaaaaattaatacggtttaccttttttctagacgtggctgcagcatgaaaatttttagtgttaaggtcaccatcacgataccagtgagt 9817231  T
113 ctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 163  Q
    ||| ||||| || |  |||||||| |||| || ||||||||| ||||||||    
9817232 cttagctcgatgccatcaatacttgtcctatttaatcatcaagtgtgtcat 9817282  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 10719057 - 10719207
Alignment:
13 catcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgt 112  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||  ||| || || | ||||||||||||||||||||| ||    
10719057 catcattttccaaaaaattaatacggtttaccttttttctagacgtggctgcagcatgaaaatttttagtgttaaggtcaccatcacgataccagtgagt 10719156  T
113 ctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 163  Q
    ||| ||||| || |  |||||||| |||| || ||||||||| ||||||||    
10719157 cttagctcgatgccatcaatacttgtcctatttaatcatcaagtgtgtcat 10719207  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 20483981 - 20483935
Alignment:
36 cggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 82  Q
    ||||||||||| |||||  ||||||| ||||||||||||||||||||    
20483981 cggtttaccttttttctaaacgtggcagaagcatgaaaaaatttggt 20483935  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 21115520 - 21115432
Alignment:
63 gaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcat 151  Q
    |||||||||||||| || || || |  ||||||||||||||||| || || || || ||||| |||||||| ||||| ||||| |||||    
21115520 gaagcatgaaaaaacttcgtgtttagatcaccatcacgataccaatgagttttcgcacgctgacgccaatatttatcttcttgtatcat 21115432  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 30302081 - 30302015
Alignment:
12 tcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaattt 79  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
30302081 tcatcattatccaaaaaattaatgcggtttacct-ctttcttgacgtggctgaagcatgaaaaaattt 30302015  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 14779577 - 14779531
Alignment:
63 gaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtg 109  Q
    ||||||| |||||| ||||| |||||||| |||||||||||||||||    
14779577 gaagcataaaaaaaattggtgttcaagtccccatcacgataccagtg 14779531  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 20584800 - 20584724
Alignment:
69 tgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttg 145  Q
    ||||| ||||| || |||||||  ||||| ||||||||||| || || ||||  |||||||||||| ||||||||||    
20584800 tgaaagaatttcgtgttcaagtatccatcgcgataccagtgagttttggctctttgtcgccaatacatatcctcttg 20584724  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 15229790 - 15229641
Alignment:
13 catcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgt 112  Q
    ||||||| |||||||||||||| ||||||||||| ||||  || ||||||||||||| ||    ||| ||||| | |||||||| ||| ||||| || ||    
15229790 catcattttccaaaaaattaatacggtttaccttttttcaagatgtggctgaagcatcaatttttttagtattaaggtcaccat-acggtaccaatgagt 15229692  T
113 ctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 163  Q
    ||| || ||||| ||||||||||||||||||||||| ||||| || |||||    
15229691 cttagcacgctgccgccaatacttatcctcttgaataatcaagtgcgtcat 15229641  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 10505307 - 10505436
Alignment:
31 taatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgcca 130  Q
    ||||| |||||||||||||| | || ||||  || |||||||||||||| |||||||  || ||| |||||||||| ||  |||| ||||| || | |||    
10505307 taatgtggtttaccttctttttagatgtggtagaggcatgaaaaaatttagtattcatatcgccaacacgataccaatggatcttggctcgttgcctcca 10505406  T
131 atacttatcctcttgaatcatcaaatgtgt 160  Q
    ||| ||||| ||||||||||||| ||||||    
10505407 atatttatcttcttgaatcatcagatgtgt 10505436  T

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Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 438 - 540
Alignment:
45 ttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctctt 144  Q
    |||||||| || || || ||||||||||| ||||||||||| | ||| |||||||| |||||||||||||| |||| ||| | ||||||| | || ||||    
438 ttctttctggaggttgcggaagcatgaaagaatttggtattaaggtctccatcacggtaccagtgtgtcttagctctctgcctccaatacatgtcttctt 537  T
145 gaa 147  Q
    |||    
538 gaa 540  T

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Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 26706 - 26815
Alignment:
38 gtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatactta 137  Q
    |||||| |||||||  || || || ||||| || || ||||||||||| | ||| |||||||||||||||||||| || |||| ||| | ||||||| ||    
26706 gtttactttctttcaggaggttgcggaagcgtggaagaatttggtatttaggtctccatcacgataccagtgtgttttagctctctgcctccaatacata 26805  T
138 tcctcttgaa 147  Q
    || |||||||    
26806 tcttcttgaa 26815  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 34932284 - 34932178
Alignment:
39 tttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttat 138  Q
    ||||| |||||||| || || || || ||||| || ||||| || |||| ||| |||||||||||| |||| || || |||| ||||| ||||||| |||    
34932284 tttactttctttctggaggttgcggacgcatggaagaattttgtgttcaggtctccatcacgatacaagtgcgttttagctctctgtctccaatacatat 34932185  T
139 cctcttg 145  Q
    |||||||    
34932184 cctcttg 34932178  T

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