View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18055_low_10 (Length: 243)

Name: NF18055_low_10
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18055_low_10
NF18055_low_10
[»] chr2 (11 HSPs)
chr2 (1-231)||(17282635-17282869)
chr2 (132-228)||(1552286-1552382)
chr2 (131-231)||(1894737-1894837)
chr2 (147-231)||(3920936-3921020)
chr2 (139-223)||(4868949-4869033)
chr2 (134-200)||(30799263-30799329)
chr2 (131-223)||(34659578-34659673)
chr2 (139-206)||(17374635-17374702)
chr2 (139-217)||(11163758-11163836)
chr2 (75-118)||(31415490-31415533)
chr2 (142-194)||(34661783-34661835)
[»] chr5 (12 HSPs)
chr5 (134-223)||(38959302-38959391)
chr5 (132-231)||(1157887-1157987)
chr5 (132-223)||(7269967-7270058)
chr5 (147-231)||(6989168-6989252)
chr5 (131-231)||(21600508-21600611)
chr5 (132-211)||(26656040-26656119)
chr5 (132-211)||(26927627-26927706)
chr5 (131-206)||(41356932-41357007)
chr5 (131-217)||(18696317-18696403)
chr5 (131-223)||(27170833-27170923)
chr5 (132-223)||(1377540-1377631)
chr5 (139-206)||(6031059-6031126)
[»] chr6 (6 HSPs)
chr6 (132-231)||(1869249-1869348)
chr6 (158-228)||(20739948-20740018)
chr6 (139-206)||(21880758-21880825)
chr6 (135-222)||(34503405-34503491)
chr6 (139-193)||(32018598-32018652)
chr6 (139-183)||(13032350-13032394)
[»] chr8 (4 HSPs)
chr8 (133-223)||(5993937-5994027)
chr8 (132-223)||(20860611-20860702)
chr8 (139-223)||(6443330-6443414)
chr8 (132-223)||(10408138-10408229)
[»] chr4 (8 HSPs)
chr4 (139-231)||(47519145-47519237)
chr4 (132-231)||(31360759-31360858)
chr4 (139-223)||(34227681-34227765)
chr4 (139-231)||(53201586-53201678)
chr4 (140-223)||(24958272-24958355)
chr4 (140-223)||(50626521-50626603)
chr4 (131-223)||(14566700-14566798)
chr4 (139-183)||(52721866-52721910)
[»] chr1 (9 HSPs)
chr1 (131-223)||(615052-615144)
chr1 (131-231)||(25790950-25791049)
chr1 (139-217)||(27340304-27340382)
chr1 (131-223)||(34117411-34117503)
chr1 (139-223)||(11408504-11408588)
chr1 (131-223)||(34653202-34653294)
chr1 (161-227)||(39709717-39709783)
chr1 (139-183)||(15123855-15123899)
chr1 (139-183)||(15148043-15148087)
[»] chr3 (7 HSPs)
chr3 (132-223)||(893671-893762)
chr3 (131-223)||(43275262-43275354)
chr3 (132-211)||(3364219-3364298)
chr3 (139-183)||(20585550-20585594)
chr3 (140-227)||(27741827-27741914)
chr3 (139-202)||(50735378-50735441)
chr3 (139-202)||(50777414-50777477)
[»] chr7 (5 HSPs)
chr7 (139-230)||(11699040-11699131)
chr7 (135-203)||(3959112-3959180)
chr7 (139-217)||(29549916-29549994)
chr7 (133-217)||(3301738-3301823)
chr7 (139-183)||(47718833-47718877)
[»] scaffold0005 (1 HSPs)
scaffold0005 (131-223)||(250577-250675)
[»] scaffold0009 (1 HSPs)
scaffold0009 (162-222)||(53805-53865)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 17282869 - 17282635
Alignment:
Q  1 aaactgaatgattatcaactgaactaatcattgattgcagttcaaatgtgacatgttagtcgtctcacacgtacatgtttgattctactttgataataat 100  Q
    |||||||||||||| |||| ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17282869 aaactgaatgattaccaaccgaactaatcattgattggagtttaaatgtgatatgttagtcgtctcacacgtacatgtttggttctactttgataataat 17282770  T
Q  101 tgagtttaagtgaattga----nnnnnnnnnnnngaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggct 196  Q
    ||||||||||||||||||                |||||| |||||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||    
T  17282769 tgagtttaagtgaattgattttttttttttttttgaaaaaagtaaaatggaatttattaagataacaattaatcttaaccagcacaaagagtgctaggct 17282670  T
Q  197 aggagtcttacagtagcaacaaacaaaagatgatg 231  Q
    ||||||||||| ||||||||||||||| |||||||    
T  17282669 aggagtcttacggtagcaacaaacaaaggatgatg 17282635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 1552382 - 1552286
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatg 228  Q
    |||||| ||||||  ||||||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||||||||||||||||||| ||||    
T  1552382 aaaaagttaaaatagaatttattaagatagcaatgaatcttaacgagcacaaggagtgctaggctaagagtcttacagtagcaacaaacaaaggatg 1552286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 1894737 - 1894837
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatgat 230  Q
    ||||||| ||||||  ||||||||||||||||||||||| |||||||||||||  |||| ||||||||||||||||| ||||||||||||||| ||||||    
T  1894737 gaaaaagctaaaatagaatttattaagatagcaatgaattttaaccagcacaaggagtgttaggctaggagtcttacggtagcaacaaacaaaggatgat 1894836  T
Q  231 g 231  Q
    |    
T  1894837 g 1894837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 3920936 - 3921020
Alignment:
Q  147 aatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatgatg 231  Q
    ||||||||||||||||||||| || ||||||||||||  ||||||| | |||||||||||||||||||||||||||| |||||||    
T  3920936 aatttattaagatagcaatgagtcataaccagcacaaggagtgctaagttaggagtcttacagtagcaacaaacaaatgatgatg 3921020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 4868949 - 4869033
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    |||||||||||||||||| || | |||||||||||| ||||||||  ||||||||||||||||||||| |||||||||| |||||    
T  4868949 taaaatgaaatttattaaaatcgaaatgaatcttaatcagcacaaggagtgctaggctaggagtcttaaagtagcaacatacaaa 4869033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 30799263 - 30799329
Alignment:
Q  134 aaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctagga 200  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||    
T  30799263 aaagttaaaatgaaatttattaaaatcgcaatgaatcttaaccagcacaagaagtgttaggctagga 30799329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 34659578 - 34659673
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaag---tgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| |||||||||||||||||| || ||||||||||||||||||||| |  ||   ||||||| ||||||||||| |||||||||| |||||    
T  34659578 gaaaaagctaaaatgaaatttattaaaatcgcaatgaatcttaaccagcacgaggagtgctgctaggttaggagtcttaaagtagcaacatacaaa 34659673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 17374635 - 17374702
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtctta 206  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||  |||| || |||||||||||||    
T  17374635 taaaatgaaatttattaaaatcacaatgaatcttaaccagcacaaggagtgttaagctaggagtctta 17374702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 11163836 - 11163758
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaaca 217  Q
    ||||||| |||||||||| || || ||||||||||||||| |||   ||||||||| ||||||||||| ||||| ||||    
T  11163836 taaaatggaatttattaacatcgcgatgaatcttaaccagtacagggagtgctaggttaggagtcttaaagtagtaaca 11163758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 31415533 - 31415490
Alignment:
Q  75 atgtttgattctactttgataataattgagtttaagtgaattga 118  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||    
T  31415533 atgtttggttctactttgacaataattgattttaagtgaattga 31415490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 34661783 - 34661835
Alignment:
Q  142 aatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctagg 194  Q
    ||||||||||||||| ||  |||||| |||| |||||||||||| ||||||||    
T  34661783 aatgaaatttattaaaatcacaatgagtcttgaccagcacaaaaggtgctagg 34661835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 38959391 - 38959302
Alignment:
Q  134 aaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    |||| ||||||| ||||||||||||||||||||||||||||| |||||||  |||||||||||| |||||||||||||||||||||||||    
T  38959391 aaagctaaaatggaatttattaagatagcaatgaatcttaactagcacaaggagtgctaggctaagagtcttacagtagcaacaaacaaa 38959302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 1157987 - 1157887
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtg-ctaggctaggagtcttacagtagcaacaaacaaaagatgat 230  Q
    |||||| ||||||| ||||||||||||||||||| |||||||||||||||||  |||| |||||||||||||||||||||||||||||| ||| ||||||    
T  1157987 aaaaagttaaaatggaatttattaagatagcaataaatcttaaccagcacaagcagtgtctaggctaggagtcttacagtagcaacaaataaaggatgat 1157888  T
Q  231 g 231  Q
    |    
T  1157887 g 1157887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 7269967 - 7270058
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    |||||| |||||| ||||||||||| || |||||||||||||||||||||||  | ||||||||||||||||||| |||||||||| |||||    
T  7269967 aaaaagctaaaataaaatttattaaaatcgcaatgaatcttaaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaa 7270058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 6989168 - 6989252
Alignment:
Q  147 aatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatgatg 231  Q
    ||||||||||||||||||||||||||||||| || ||  ||||||||| |||  ||||||||||||||||||||||| |||||||    
T  6989168 aatttattaagatagcaatgaatcttaaccaacataaggagtgctaggttagaggtcttacagtagcaacaaacaaaggatgatg 6989252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 21600508 - 21600611
Alignment:
Q  131 gaaaaagg-taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggcta--ggagtcttacagtagcaacaaacaaaagat 227  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||  |||| |||||||   ||||||||| ||||||||||||||| |||    
T  21600508 gaaaaaggctaaaatggaatttattaagatagcaatgaatcttaaccagtacaaggagtgttaggctatgagagtcttaccgtagcaacaaacaaatgat 21600607  T
Q  228 gatg 231  Q
    ||||    
T  21600608 gatg 21600611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 26656040 - 26656119
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagta 211  Q
    |||||||||||||| |||||||||| || |||||||||||||||||||||||  | ||||||||||||||||||| ||||    
T  26656040 aaaaaggtaaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctaggctaggagtcttaaagta 26656119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 26927627 - 26927706
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagta 211  Q
    |||||||||||||| |||||||||| || |||||||||||||||||||||||  | ||||||||||||||||||| ||||    
T  26927627 aaaaaggtaaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctaggctaggagtcttaaagta 26927706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 41357007 - 41356932
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtctta 206  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| |||||| |  |||||||||||||||||||||    
T  41357007 gaaaaagctaaaatgaaatttattaagataacaatgaatcttaatcagcacgaggagtgctaggctaggagtctta 41356932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 18696317 - 18696403
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaaca 217  Q
    ||||||| |||||||||||||||||| || |||||||||||||||| ||||||  || | |||||||||||| ||||| ||||||||    
T  18696317 gaaaaagctaaaatgaaatttattaaaatggcaatgaatcttaaccggcacaacgagagttaggctaggagttttacaatagcaaca 18696403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 27170923 - 27170833
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| ||||||||| |||||||| || |||||||||||||||||||||||  |||| |||||||||||||||| | |||||||| |||||    
T  27170923 gaaaaagttaaaatgaa-tttattaaaatcgcaatgaatcttaaccagcacaaggagtgataggctaggagtctta-aatagcaacatacaaa 27170833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 1377540 - 1377631
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    |||||| |||||||||||||||| | || ||||| |||||||||||||||||  | || |||| ||||||||||| |||| ||||| |||||    
T  1377540 aaaaagttaaaatgaaatttattcaaatcgcaattaatcttaaccagcacaaggaatgttaggttaggagtcttaaagtaacaacatacaaa 1377631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 6031126 - 6031059
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtctta 206  Q
    |||||||||||||||||| || | |||||||||||||||||||||| |||| |||||||  |||||||    
T  6031126 taaaatgaaatttattaaaatcgaaatgaatcttaaccagcacaaagagtgttaggctataagtctta 6031059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 1869249 - 1869348
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatgatg 231  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||||||||||  | | ||||||| ||||||||||| |||||||||||||| |||||||    
T  1869249 aaaaagctaaaatggaatttattaagataacaatgaatcttaaccagcacaaggaatactaggctcggagtcttacattagcaacaaacaaaggatgatg 1869348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 20739948 - 20740018
Alignment:
Q  158 atagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatg 228  Q
    ||||||||||||||||||||||||||  |||| || |||||||||||||||||||||||||||||| ||||    
T  20739948 atagcaatgaatcttaaccagcacaaggagtgttaagctaggagtcttacagtagcaacaaacaaaggatg 20740018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 21880758 - 21880825
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtctta 206  Q
    |||||||||||||||||| || |||||||||||||||||||||||  ||||||||||||||| |||||    
T  21880758 taaaatgaaatttattaaaatcgcaatgaatcttaaccagcacaaggagtgctaggctaggaatctta 21880825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 34503491 - 34503405
Alignment:
Q  135 aaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaa 222  Q
    |||| |||||||||||||| || ||  ||||||||| ||||||||| ||  | |||||||||||||||| || |||||||||| ||||    
T  34503491 aaggcaaaatgaaatttataaa-atcacaatgaatcctaaccagcagaaggaatgctaggctaggagtcgtaaagtagcaacatacaa 34503405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 32018652 - 32018598
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctag 193  Q
    |||||||||||||||||| ||  ||||||||| |||||||||||| || ||||||    
T  32018652 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagaaatgctag 32018598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 13032350 - 13032394
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaa 183  Q
    |||||||||||||||||| ||  ||||||||| ||||||||||||    
T  13032350 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaa 13032394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 5993937 - 5994027
Alignment:
Q  133 aaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||| ||||||| |||||||||| || |||||||||||||| ||||||||  ||||||||||||||||||||| |||||||||| |||||    
T  5993937 aaaagctaaaatggaatttattaaaatcgcaatgaatcttaatcagcacaaggagtgctaggctaggagtcttaaagtagcaacatacaaa 5994027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 20860611 - 20860702
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    |||||| ||||||| |||||||||| || |||||||||||||||||||||||  |||| ||||| |||||||||| |||||||||| |||||    
T  20860611 aaaaagttaaaatggaatttattaaaatcgcaatgaatcttaaccagcacaaggagtgttaggcgaggagtcttaaagtagcaacatacaaa 20860702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 6443330 - 6443414
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    |||||||||||||||||| ||  ||||||||| ||||||||||||  |||||||||||||||||||||  ||||||||| |||||    
T  6443330 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggagtgctaggctaggagtcttatcgtagcaacatacaaa 6443414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 10408138 - 10408229
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    |||||| ||||||| |||||||||| ||  |||| |||||||||||||| ||  |||| |||||||| ||||||| ||| |||||| |||||    
T  10408138 aaaaagataaaatggaatttattaaaatcacaataaatcttaaccagcaaaaggagtgttaggctagaagtcttagagttgcaacatacaaa 10408229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 47519237 - 47519145
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatgatg 231  Q
    ||||||| |||||||||||||| |||| |||||||||||||||||  |||| |||| || |||||||||| |||||||||||||| |||||||    
T  47519237 taaaatggaatttattaagataacaataaatcttaaccagcacaaggagtgttaggttaagagtcttacactagcaacaaacaaaggatgatg 47519145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 31360858 - 31360759
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatgatg 231  Q
    |||||| |||||||||||||||||||||| || ||||||||| |||||||||  |||| ||||| || ||||||| |||||||||| ||||| |||||||    
T  31360858 aaaaagctaaaatgaaatttattaagataacactgaatcttagccagcacaaggagtgttaggccagaagtcttatagtagcaacacacaaatgatgatg 31360759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 34227765 - 34227681
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| || |||||||  | ||||||||||||||||||||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  34227765 taaaatggaacttattaatctcgcaatgaatcttaaccagcacaaagcgtgttaggctaagagtcttaaagtagcaacaaacaaa 34227681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 53201586 - 53201678
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatgatg 231  Q
    ||||||| ||||| |||| |||||||| |||||||||| ||||||  | || ||||||||||||||||||||| ||| ||||||| |||||||    
T  53201586 taaaatggaatttgttaatatagcaattaatcttaaccggcacaaggaatgttaggctaggagtcttacagtaacaataaacaaaggatgatg 53201678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 24958355 - 24958272
Alignment:
Q  140 aaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    |||||| |||||||||| || |||||||||| | ||||||||||  | ||||||||||||||||||| |||||||||| |||||    
T  24958355 aaaatggaatttattaaaattgcaatgaatcctgaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaa 24958272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 50626521 - 50626603
Alignment:
Q  140 aaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||||||||||||| ||  |||||| || | |||| ||||||||||  ||||||||||||| || |||||||||| |||||    
T  50626521 aaaatgaaatttattaaaatcacaatgagtcatgaccaacacaaaaagt-ttaggctaggagtcgtaaagtagcaacatacaaa 50626603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 14566798 - 14566700
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaa----aa--agtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| ||||||  ||| |||||| || |||||||||||||||||||||||    ||  ||||||||| ||||||||||| | |||||||| |||||    
T  14566798 gaaaaagctaaaatagaatgtattaaaatcgcaatgaatcttaaccagcacaagcacaaggagtgctaggttaggagtcttaaaatagcaacatacaaa 14566700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 52721910 - 52721866
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaa 183  Q
    |||||||||||||||||| ||  ||||||||| ||||||||||||    
T  52721910 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaa 52721866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 615052 - 615144
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| ||||||| |||||||||| || | ||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||| |||||    
T  615052 gaaaaagttaaaatggaatttattaaaatcgaaatgaatcttaactagcacaagaagtgctatgctaggagtcttaaagtagcaacatacaaa 615144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 25790950 - 25791049
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatgat 230  Q
    ||||||| |||||||||||||||||||||| |||| | |||||||||||||||  ||||| ||| ||||||||||| ||| |||||||||||| ||||||    
T  25790950 gaaaaagctaaaatgaaatttattaagataacaataattcttaaccagcacaaggagtgccaggttaggagtctta-agttgcaacaaacaaatgatgat 25791048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 27340382 - 27340304
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaaca 217  Q
    |||||||||||||||||| || |||||||||| ||||| ||||||| |||||||| ||| |||||||| ||||||||||    
T  27340382 taaaatgaaatttattaaaatggcaatgaatcctaaccggcacaaagagtgctagactacgagtcttaaagtagcaaca 27340304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 34117411 - 34117503
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| |||||||||||||||||| |   |||| |||||||||||||||||  ||||||| |||| |||||||||| |||||||| |||||    
T  34117411 gaaaaagctaaaatgaaatttattaaaaccacaattaatcttaaccagcacaaggagtgctaagctaagagtcttacaatagcaacatacaaa 34117503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 11408588 - 11408504
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| |||||||||| || |||||||||| ||||||||||||  ||||||||| || |||||||| ||||| |||| |||||    
T  11408588 taaaatggaatttattaaaattgcaatgaatcataaccagcacaaggagtgctaggttatgagtcttaaagtagtaacatacaaa 11408504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 34653202 - 34653294
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| ||||||| |||||||||| || ||||||||||||||| || ||||  ||||||| ||| | ||||||| | ||| ||||||||||    
T  34653202 gaaaaagttaaaatggaatttattaaaatcgcaatgaatcttaacgagtacaaggagtgctacgcttgaagtcttaaaatagtaacaaacaaa 34653294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 39709783 - 39709717
Alignment:
Q  161 gcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagat 227  Q
    |||||||||||||||   | |||  ||||||||||| ||||||||| |||||||||| |||||||||    
T  39709783 gcaatgaatcttaactgacgcaaggagtgctaggcttggagtcttaaagtagcaacatacaaaagat 39709717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 15123899 - 15123855
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaa 183  Q
    |||||||||||||||||| ||  ||||||||| ||||||||||||    
T  15123899 taaaatgaaatttattaaaatcccaatgaatcctaaccagcacaa 15123855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 15148087 - 15148043
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaa 183  Q
    |||||||||||||||||| ||  ||||||||| ||||||||||||    
T  15148087 taaaatgaaatttattaaaatcccaatgaatcctaaccagcacaa 15148043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 893762 - 893671
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    |||||| ||||||| |||||||||| || ||||| |||||||||||||||||  ||||||||||||||||||||| ||||| |||| |||||    
T  893762 aaaaagctaaaatggaatttattaaaatcgcaataaatcttaaccagcacaaggagtgctaggctaggagtcttaaagtagaaacatacaaa 893671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 43275262 - 43275354
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| || ||||||||||||||| || |||||||||||||| ||||| ||  |||||||| ||||||||| || |||||||||| |||||    
T  43275262 gaaaaagctagaatgaaatttattaaaatcgcaatgaatcttaatcagcataaggagtgctagcctaggagtcataaagtagcaacatacaaa 43275354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 3364298 - 3364219
Alignment:
Q  132 aaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagta 211  Q
    |||||| ||||||| |||||||||| || |||||||||||||||||||||||  |||| |||| || |||||||| ||||    
T  3364298 aaaaagataaaatggaatttattaaaattgcaatgaatcttaaccagcacaaggagtgttaggttatgagtcttaaagta 3364219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 20585594 - 20585550
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaa 183  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||    
T  20585594 taaaatgaaatttattaaaatcacaatgaatcttaaccagcacaa 20585550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 27741914 - 27741827
Alignment:
Q  140 aaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagat 227  Q
    ||||||||||||||||| ||  |||||| || | || | |||||  ||||||||| |||||||| || |||||||||| |||||||||    
T  27741914 aaaatgaaatttattaaaatcacaatgagtcatgactatcacaaggagtgctaggttaggagtcgtaaagtagcaacatacaaaagat 27741827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 50735441 - 50735378
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagt 202  Q
    ||||||| | |||||||| || |||||||||||||||||||| ||  |||||||||||| ||||    
T  50735441 taaaatggagtttattaaaattgcaatgaatcttaaccagcaaaatgagtgctaggctaagagt 50735378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 50777414 - 50777477
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagt 202  Q
    ||||||| | |||||||| || |||||||||||||||||||| ||  |||||||||||| ||||    
T  50777414 taaaatggagtttattaaaattgcaatgaatcttaaccagcaaaatgagtgctaggctaagagt 50777477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 11699131 - 11699040
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaaaagatgat 230  Q
    ||||||| ||||||| |||||| |||||||||||||||  |||||  ||||||||| || |||||||| |||||||||||||||| ||||||    
T  11699131 taaaatggaatttatgaagataacaatgaatcttaaccgccacaaggagtgctaggttaagagtcttatagtagcaacaaacaaaggatgat 11699040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 3959180 - 3959112
Alignment:
Q  135 aaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtc 203  Q
    |||| ||||||||||||||||| ||  ||||||||| | |||||||||| |||||||||| ||||||||    
T  3959180 aaggaaaaatgaaatttattaaaatcacaatgaatcctgaccagcacaagaagtgctagggtaggagtc 3959112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 29549916 - 29549994
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaaca 217  Q
    |||||| ||||||||||| || |||||||||||||||| | | ||| |||| |  ||||||||||||| ||||||||||    
T  29549916 taaaataaaatttattaaaatcgcaatgaatcttaaccggtataaagagtgtttcgctaggagtcttaaagtagcaaca 29549994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 3301738 - 3301823
Alignment:
Q  133 aaaaggtaaaatgaaatttattaagatagcaatgaatc-ttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaaca 217  Q
    ||||| |||||||||||||||||| || |||||||||| |||||||||||||  |||  || | ||| ||||||| ||||||||||    
T  3301738 aaaagttaaaatgaaatttattaaaatcgcaatgaatctttaaccagcacaaggagtattaaggtagaagtcttaaagtagcaaca 3301823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 47718833 - 47718877
Alignment:
Q  139 taaaatgaaatttattaagatagcaatgaatcttaaccagcacaa 183  Q
    |||||||||||||||||| ||  ||||||||| ||||||||||||    
T  47718833 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaa 47718877  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 250577 - 250675
Alignment:
Q  131 gaaaaaggtaaaatgaaatttattaagatagcaatgaatcttaaccagcacaa----aa--agtgctaggctaggagtcttacagtagcaacaaacaaa 223  Q
    ||||||| ||||||  ||| |||||| || |||||||||||||||||||||||    ||  ||||||||| ||||||||||| | |||||||| |||||    
T  250577 gaaaaagctaaaatagaatgtattaaaatcgcaatgaatcttaaccagcacaagcacaaggagtgctaggttaggagtcttaaaatagcaacatacaaa 250675  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 53805 - 53865
Alignment:
Q  162 caatgaatcttaaccagcacaaaaagtgctaggctaggagtcttacagtagcaacaaacaa 222  Q
    ||||||||| ||||||||||||   ||| ||||||||||||| || |||||||||| ||||    
T  53805 caatgaatcataaccagcacaatgcgtgttaggctaggagtcgtaaagtagcaacatacaa 53865  T

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