View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18055_low_12 (Length: 237)

Name: NF18055_low_12
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18055_low_12
NF18055_low_12
[»] chr1 (3 HSPs)
chr1 (1-122)||(26088476-26088599)
chr1 (152-182)||(26088428-26088458)
chr1 (74-118)||(7373705-7373749)
[»] chr5 (3 HSPs)
chr5 (66-122)||(5355417-5355473)
chr5 (66-118)||(22408126-22408178)
chr5 (45-109)||(15711948-15712015)
[»] chr7 (2 HSPs)
chr7 (65-99)||(4924588-4924622)
chr7 (44-122)||(23311466-23311547)
[»] chr4 (2 HSPs)
chr4 (138-181)||(19904194-19904237)
chr4 (136-181)||(32150045-32150090)
[»] chr8 (1 HSPs)
chr8 (136-181)||(9195883-9195928)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 26088599 - 26088476
Alignment:
Q  1 tcgagtcaagatcatctccatttatcaatctctcaannnnnnn--catttgaagagataaatacacaaagtttgaaaataattaatagtaatatgactca 98  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26088599 tcgagtcaagatcatctccatttatcaatctctcaatttttttttcatttgaagagataaatacacaaagtttgaaaataattaatagtaatatgactca 26088500  T
Q  99 cttaatggtaggatccactacata 122  Q
    ||||||||||||||||||||||||    
T  26088499 cttaatggtaggatccactacata 26088476  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 182
Target Start/End: Complemental strand, 26088458 - 26088428
Alignment:
Q  152 tattatcaatttacttttagcaaatagagaa 182  Q
    |||||||||||||||||||||||||||||||    
T  26088458 tattatcaatttacttttagcaaatagagaa 26088428  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 7373705 - 7373749
Alignment:
Q  74 aaataattaatagtaatatgactcacttaatggtaggatccacta 118  Q
    ||||||||||||||  |  ||||||||||||||||||||||||||    
T  7373705 aaataattaatagtggtgagactcacttaatggtaggatccacta 7373749  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 5355417 - 5355473
Alignment:
Q  66 aagtttgaaaataattaatagtaatatgactcacttaatggtaggatccactacata 122  Q
    ||||||||||||||||| || | ||  ||||||||||||||||||||||||||||||    
T  5355417 aagtttgaaaataattagtaatgatgagactcacttaatggtaggatccactacata 5355473  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 22408126 - 22408178
Alignment:
Q  66 aagtttgaaaataattaatagtaatatgactcacttaatggtaggatccacta 118  Q
    ||||||||||||||||||||||  | |||  ||||||||||||||||||||||    
T  22408126 aagtttgaaaataattaatagttgtgtgatccacttaatggtaggatccacta 22408178  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 15712015 - 15711948
Alignment:
Q  45 atttgaagagataaatacacaaag---tttgaaaataattaatagtaatatgactcacttaatggtag 109  Q
    ||||| ||||||||| ||||||||   ||| ||||||||||||||||||  || ||||||||||||||    
T  15712015 atttggagagataaagacacaaagacatttaaaaataattaatagtaatgagattcacttaatggtag 15711948  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 4924588 - 4924622
Alignment:
Q  65 aaagtttgaaaataattaatagtaatatgactcac 99  Q
    |||||||||||||||||||||||||||||||||||    
T  4924588 aaagtttgaaaataattaatagtaatatgactcac 4924622  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 23311466 - 23311547
Alignment:
Q  44 catttgaagagataaatacacaaa---gtttgaaaataattaatagtaatatgactcacttaatggtaggatccactacata 122  Q
    |||||| ||||||||| |||||||   ||||||||||||| ||||||||   ||||||| || |||||||||||| ||||||    
T  23311466 catttggagagataaaaacacaaaaaagtttgaaaataatcaatagtaacgggactcacgtagtggtaggatccattacata 23311547  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 19904237 - 19904194
Alignment:
Q  138 ctctcaccaaatggtattatcaatttacttttagcaaatagaga 181  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||    
T  19904237 ctctcagcaaatgatattatcaatttatttttagcaaatagaga 19904194  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 32150090 - 32150045
Alignment:
Q  136 atctctcaccaaatggtattatcaatttacttttagcaaatagaga 181  Q
    |||||||||||||||| | |||| ||||||||||||||||| ||||    
T  32150090 atctctcaccaaatggcaatatccatttacttttagcaaatggaga 32150045  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 9195928 - 9195883
Alignment:
Q  136 atctctcaccaaatggtattatcaatttacttttagcaaatagaga 181  Q
    ||||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  9195928 atctctcacaaaatgatattatccatttacttttagcaaatggaga 9195883  T

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