View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18055_low_2 (Length: 699)
Name: NF18055_low_2
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18055_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 13 - 684
Target Start/End: Original strand, 22875992 - 22876663
Alignment:
| Q |
13 |
attcttgaatagtaaggcatctttctatgcaaggaactcttaccatcgctaaatgtcgcttcaacggttgtgctgttgtccaggttgatcaaaagtattg |
112 |
Q |
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| T |
22875992 |
attcttgaatagtaaggcatctttctatgcaaggaactcttaccatcgctaaatgtcgcttcaacggttgtgctgttgtccaggttgatcaaaagtattg |
22876091 |
T |
|
| Q |
113 |
tgattcctttctgtaagatcaagtatataaaattagatttcaaagttggtaactatacattcacttgataatcatggtaataagaaaattcacttacgga |
212 |
Q |
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| T |
22876092 |
tgattcctttctgtaagatcaagtatattaaattagatttcaaagttggtaactatacattcacttgataatcatggtgataagaaaattcacttacgga |
22876191 |
T |
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| Q |
213 |
ttgttttgcacagtgcgcgtaagctcgtatcttgtttgttcctgagaaggtagttgatagtacacctcttcccatgagtcggtgccaaagaagagcacta |
312 |
Q |
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| T |
22876192 |
ttgttttgcacagtgcgcataagctcgtatcttgtttgttcctgagaaggtagttgatagtacacctcttcccatgagtcggtgccaaagaagagcacta |
22876291 |
T |
|
| Q |
313 |
caaatatgaaatttagtcacattaccacaaaaatgttaccatgaaaatactatggatggatccagttgaaatagggaattttccaaggtagacagagtta |
412 |
Q |
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| T |
22876292 |
caaatatgaaatttagtcacattaccacaaaaatgttaccatgaaaatactatggatggatccagttgaaatagggaattttccaaggtagacagagtta |
22876391 |
T |
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| Q |
413 |
tatgtcaagaaattaatcaaccacacgacacatatattaagagttcatattagatcaagaaaaattatatacaaatgctgaaccaagatagtccatgttc |
512 |
Q |
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| T |
22876392 |
tatgtcaagaaattaatcaaccacacgacacatatattaagagttcatattagatcaagaaaaattatatacaaatgctgaaccaagatagtccatgttc |
22876491 |
T |
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| Q |
513 |
cgacctcaaatactctacaatccttatcgaaggtctaatccacacatgcaaactgaaaggccctttatccccttagccttgacagtgggctactgttccg |
612 |
Q |
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| T |
22876492 |
cgacctcaaatactctacaatccttatcgaaggtctaatccacacatgcaaactgaaaggccctttatccccttagcattgacagtgggctactgttccg |
22876591 |
T |
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| Q |
613 |
tcatgtcatgagaatcaaagctaagggtggtttataaacatccacactcatctacccaccgaggtgcctatt |
684 |
Q |
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| T |
22876592 |
tcatgtcatgagaatcaaagctaagggtggtttataaacatccacactcatctacccaccgaggtgcctatt |
22876663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 47989566 - 47989636
Alignment:
| Q |
241 |
atcttgtttgttcctgagaaggtagttgatagtacacctcttcccatgagtcggtgccaaagaagagcact |
311 |
Q |
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| T |
47989566 |
atcttctttgttccatagaaggtagttgacaggacacgtcctcccatgagtcggtgccaaagaagagcact |
47989636 |
T |
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