View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18055_low_3 (Length: 674)
Name: NF18055_low_3
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18055_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 13 - 655
Target Start/End: Original strand, 5643970 - 5644611
Alignment:
| Q |
13 |
aaaatcaataatacaatattttcagcatgaaatcaaataaatgaatccaaaaacacaaacttttcaacatgaaatggaatcaaataaatgaacactaaaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5643970 |
aaaatcaataatacaatattttcagcatgaaatcaaataaatgaatccaaaaacacaaacttttcaacatgaaatggtatcaaataaatgaacactaaaa |
5644069 |
T |
|
| Q |
113 |
cacaaattttcaaaatgaaatcatacacaatgaaaacataattttcaaactgaaatcaaactaataaaccttggaacacaatattcaacatgaaatcaat |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5644070 |
cacaaatttttaaaatgaaatcatacacaatgaaaacataattttcaaactgaaatcaaactaataaaccttggaacacaatattcaacatgaaatcaat |
5644169 |
T |
|
| Q |
213 |
taaaataaaaacataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaacgtaaagtcaaataaaataaacttgaaaacataatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |
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| T |
5644170 |
taaaataaaaacataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaacgtaaaatcaaataaaataaactttaaaacacaatt |
5644269 |
T |
|
| Q |
313 |
ttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaact |
412 |
Q |
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| T |
5644270 |
ttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaact |
5644369 |
T |
|
| Q |
413 |
tcgccttcactgtatcatcatcactcgaaccactagaaaacgcaaacgaatatcagtgagcttaaaaccttgaattcttaaactaatagaacaataaaat |
512 |
Q |
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| T |
5644370 |
tcgccttcactgtatcatcatcactcgaaccactagaaaacgcaaacgaatatcagtgagcttaaaaccttgaattcttaaactaatagaacaataaaat |
5644469 |
T |
|
| Q |
513 |
cnnnnnnnnttataacaaaaactcactcattcttggcgtaacggtgaggccaacgggttttaacttcatcagctagaaaaggatctccgatgaagaatga |
612 |
Q |
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| T |
5644470 |
c-aaaaaaattataacaaaaactcactcattcttggcgtaacggtgaggccaacgggttttagcttcatcagctagaaaaggatctccgatgaagaatga |
5644568 |
T |
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| Q |
613 |
atcgtcggcgttaaccaccgaagatcgttgtgctgctttcctc |
655 |
Q |
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| T |
5644569 |
atcgtcggcgttaaccaccgaagatcgttgtgctgctttcctc |
5644611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 35535369 - 35535486
Alignment:
| Q |
304 |
aacataattttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggt |
403 |
Q |
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|||| ||||||||||||| |||||| |||||||||| |||||| ||||||||||||| || ||| |||||||||||||||||||| ||| ||||||||| |
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| T |
35535369 |
aacacaattttatcaacattaaatgatataaaaatagaaaccttgacataagcattattatccagattatatataaccccatcaactttcgcttcacggt |
35535468 |
T |
|
| Q |
404 |
aatgaaacttcgccttca |
421 |
Q |
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| T |
35535469 |
aatgaaactacgccttca |
35535486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 333 - 453
Target Start/End: Original strand, 31944085 - 31944205
Alignment:
| Q |
333 |
aaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgccttcactgtatcatca |
432 |
Q |
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|||||||| |||||| |||||||||||||| | ||||||||| | || ||||||||| ||| |||||||||| |||||||||||||| | | |||||| |
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| T |
31944085 |
aaaaatagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttgaaactttcatca |
31944184 |
T |
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| Q |
433 |
tcactcgaaccactagaaaac |
453 |
Q |
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| T |
31944185 |
tcactcgattcactacaaaac |
31944205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 1342115 - 1342202
Alignment:
| Q |
334 |
aaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgccttca |
421 |
Q |
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||||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| ||| ||||| | || |||||||||||||||| |
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| T |
1342115 |
aaaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttcgcttcatgatagtgaaacttcgccttca |
1342202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 9394576 - 9394661
Alignment:
| Q |
336 |
aataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgccttca |
421 |
Q |
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||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| || |||||||||| |||||||| ||||||| |
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| T |
9394576 |
aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaactttgccttca |
9394661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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