View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18055_low_4 (Length: 629)
Name: NF18055_low_4
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18055_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 4 - 469
Target Start/End: Complemental strand, 1470602 - 1470138
Alignment:
| Q |
4 |
tcattatcgtagtataatcgacataatgaatatgatgtgcctttgcatgcattcgaaaatgacaagtgccaatgaatgtgatcttcgtaggaaagttaat |
103 |
Q |
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| T |
1470602 |
tcattatcttagtataatcgacataatgaatatgatatgcctttgcatgcattcgaaaatgacaagtgccaatgaatgtgatcttcgtaggaaagttaat |
1470503 |
T |
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| Q |
104 |
ctggactcacatttttgcatgcaattatccacaaaaatttgacacacgacacaacttttgaccattaactaaaatacaatacacacaaaacttcagggaa |
203 |
Q |
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| T |
1470502 |
ctggactcacatttttgcatgcaattatccacaaaaatttgacacacgacacaacttttgaccattaactaaaatacaatacacacaaaacttcagggaa |
1470403 |
T |
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| Q |
204 |
agtgtgtgaattaagaatctgcgtggaaattgaactcaattccaaaagaaaaataatagtagtacgtaaaaagacacgtataagaacctctttataattt |
303 |
Q |
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| T |
1470402 |
agtgtgtgaattaagaacctgcatggaaattgaactcaattccaaaagaaaaataatagtagtacgtaaaaagacacgtataagaacctctttataattt |
1470303 |
T |
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| Q |
304 |
aataataaagacacatttttaatggaaagaagatatatgtgaacagaaggagaaaaacatgagcttggtcttagtttcagtatttaaaaccccaataatg |
403 |
Q |
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| T |
1470302 |
aataataaagacacatttttaatggaaagaagatatatgtgaacagaaggagaaaaacatgagcttggtcttag-ttcagtatttaaaaccccaataatg |
1470204 |
T |
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| Q |
404 |
catcaaaatataaacttgaaagtgagctttaattaacacaaatacaactggttgttgggcacccac |
469 |
Q |
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| T |
1470203 |
catcaaaatataaacttgaaagtgagctttaattaacacaaatacaactggttgttgggcacccac |
1470138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 509 - 615
Target Start/End: Original strand, 43734363 - 43734469
Alignment:
| Q |
509 |
ggattaaacttgattttatgctaagagcttgatcaacgaccttggaagcaatttatttgctatagtgttcatatgaattttgcaactttgcctagctagt |
608 |
Q |
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| T |
43734363 |
ggattaaacttgattttatgctaagagcttgatcaacgaccttggaagcaatttatttgctatagtgttcatatgaattgtgcaactttgcctagctagt |
43734462 |
T |
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| Q |
609 |
tgctttt |
615 |
Q |
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| T |
43734463 |
tactttt |
43734469 |
T |
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