View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18055_low_5 (Length: 404)
Name: NF18055_low_5
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18055_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 45317474 - 45317859
Alignment:
| Q |
11 |
cacagacaccgatatatctaaatatagatcaataaaaggacagaatcgtaaaaagataaattacttgacagaatcagaaactttaagcagaggtaccaag |
110 |
Q |
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| T |
45317474 |
cacagacaccgctatatctaaatatagttcaataaaaggactgaatagtaaaaagataaattacttgccagaatcagaaactttaagcagaggtaccaag |
45317573 |
T |
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| Q |
111 |
taacagacacattacttataatagatatgcatatatttttatagagcaataatttaa----atgtagcaaaataataacaaaaaatacttaccttgtttt |
206 |
Q |
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| T |
45317574 |
taacagacacattacttatactagatatgtatatatttttatagagcaataatttatttatatgtagcaaaataataacaaaaaatacttaccttgtttt |
45317673 |
T |
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| Q |
207 |
gtgaagactgaaagatagtttagtactagtatcatacatagaagtggtcttcaagatgggggcactgcaaatggatttttccgaaggtctgaacaagtta |
306 |
Q |
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| T |
45317674 |
gtgaagactgaaagatagtttagtactagtatcatacatagaagtggtcttcaagatgggggcactgcaaatggatttttccgaaggtctgaacaagtta |
45317773 |
T |
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| Q |
307 |
ttatcaggactcaagtgaagtccaagactgcaagcagccatagccacagccatttttcaaagagttgagggaattgaaaaagagag |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317774 |
ttatcaggactcaagtgaagtccaagactgcaagcagccatagccacagccatttttcaaagagttgagggaattgaaaaagagag |
45317859 |
T |
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