View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18055_low_6 (Length: 308)
Name: NF18055_low_6
Description: NF18055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18055_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 43734224 - 43734341
Alignment:
| Q |
10 |
aagaatattctcaagtgtttttgtaaggtaagatatagaatccgtttgcttaagataattaattcgaaaaataatgttttatataaaacactttatagga |
109 |
Q |
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| T |
43734224 |
aagaatattctcaagtgtttttgtaaggtaagatatagaatacgtttgcttaagataattaattcgaaaaataatgttttatataaaacactttatagga |
43734323 |
T |
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| Q |
110 |
ttaaacttattatgtacc |
127 |
Q |
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| T |
43734324 |
ttaaacttattatgtacc |
43734341 |
T |
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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 1470065 - 1469972
Alignment:
| Q |
196 |
cagattacaagtcttggacgttcaaattatataatggtttatgtttaagataatgtacagtttcttgatggaaatttattgttcagcggaaaaa |
289 |
Q |
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| T |
1470065 |
cagattacaagtcttggacgttcaaattatataatggtttaagtttaagataatgtacagtttcttgatggaaatttattgttcagcggaaaaa |
1469972 |
T |
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